Experiment: Chloride 800 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS11080 and SGL_RS11085 are separated by 145 nucleotides SGL_RS11085 and SGL_RS20205 are separated by 275 nucleotides SGL_RS20205 and SGL_RS11090 are separated by 240 nucleotides
SGL_RS11080: SGL_RS11080 - glycerol-3-phosphate dehydrogenase, at 1,945,518 to 1,947,179
_RS11080
SGL_RS11085: SGL_RS11085 - glucosylglycerol-phosphate synthase, at 1,947,325 to 1,948,824
_RS11085
SGL_RS20205: SGL_RS20205 - glucosylglycerol biosynthesis transcriptional repressor GgpR, at 1,949,100 to 1,949,372
_RS20205
SGL_RS11090: SGL_RS11090 - glucosylglycerol hydrolase, at 1,949,613 to 1,952,270
_RS11090
Position (kb) 1947
1948
1949 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1 at 1946.369 kb on - strand, within SGL_RS11080 at 1946.394 kb on + strand, within SGL_RS11080 at 1946.484 kb on + strand, within SGL_RS11080 at 1946.634 kb on - strand, within SGL_RS11080 at 1946.634 kb on - strand, within SGL_RS11080 at 1946.658 kb on - strand, within SGL_RS11080 at 1946.697 kb on + strand, within SGL_RS11080 at 1946.877 kb on + strand, within SGL_RS11080 at 1947.068 kb on + strand at 1947.093 kb on + strand at 1947.101 kb on - strand at 1947.209 kb on - strand at 1947.358 kb on + strand at 1947.514 kb on + strand, within SGL_RS11085 at 1947.565 kb on + strand, within SGL_RS11085 at 1947.573 kb on - strand, within SGL_RS11085 at 1947.573 kb on - strand, within SGL_RS11085 at 1947.619 kb on + strand, within SGL_RS11085 at 1947.646 kb on - strand, within SGL_RS11085 at 1947.689 kb on - strand, within SGL_RS11085 at 1947.691 kb on + strand, within SGL_RS11085 at 1947.691 kb on + strand, within SGL_RS11085 at 1947.691 kb on + strand, within SGL_RS11085 at 1947.699 kb on - strand, within SGL_RS11085 at 1947.701 kb on + strand, within SGL_RS11085 at 1947.711 kb on - strand, within SGL_RS11085 at 1947.837 kb on + strand, within SGL_RS11085 at 1947.850 kb on + strand, within SGL_RS11085 at 1948.083 kb on + strand, within SGL_RS11085 at 1948.263 kb on + strand, within SGL_RS11085 at 1948.271 kb on - strand, within SGL_RS11085 at 1948.350 kb on + strand, within SGL_RS11085 at 1948.378 kb on - strand, within SGL_RS11085 at 1948.379 kb on + strand, within SGL_RS11085 at 1948.385 kb on - strand, within SGL_RS11085 at 1948.385 kb on - strand, within SGL_RS11085 at 1948.385 kb on - strand, within SGL_RS11085 at 1948.385 kb on - strand, within SGL_RS11085 at 1948.592 kb on + strand, within SGL_RS11085 at 1948.610 kb on - strand, within SGL_RS11085 at 1948.797 kb on + strand at 1948.805 kb on - strand at 1949.128 kb on - strand, within SGL_RS20205 at 1949.536 kb on + strand at 1949.536 kb on + strand at 1949.554 kb on - strand at 1949.565 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 800 mM remove 1,946,369 - SGL_RS11080 0.51 -0.0 1,946,394 + SGL_RS11080 0.53 -0.1 1,946,484 + SGL_RS11080 0.58 +0.5 1,946,634 - SGL_RS11080 0.67 -0.1 1,946,634 - SGL_RS11080 0.67 +0.4 1,946,658 - SGL_RS11080 0.69 -0.1 1,946,697 + SGL_RS11080 0.71 -0.4 1,946,877 + SGL_RS11080 0.82 -0.1 1,947,068 + -0.2 1,947,093 + -0.2 1,947,101 - -0.1 1,947,209 - +0.0 1,947,358 + -0.0 1,947,514 + SGL_RS11085 0.13 -6.3 1,947,565 + SGL_RS11085 0.16 -3.2 1,947,573 - SGL_RS11085 0.17 -4.6 1,947,573 - SGL_RS11085 0.17 -8.1 1,947,619 + SGL_RS11085 0.20 -5.8 1,947,646 - SGL_RS11085 0.21 -7.4 1,947,689 - SGL_RS11085 0.24 -6.2 1,947,691 + SGL_RS11085 0.24 -5.3 1,947,691 + SGL_RS11085 0.24 -7.5 1,947,691 + SGL_RS11085 0.24 -6.4 1,947,699 - SGL_RS11085 0.25 -7.2 1,947,701 + SGL_RS11085 0.25 -5.9 1,947,711 - SGL_RS11085 0.26 -6.6 1,947,837 + SGL_RS11085 0.34 -4.4 1,947,850 + SGL_RS11085 0.35 -5.9 1,948,083 + SGL_RS11085 0.51 -7.1 1,948,263 + SGL_RS11085 0.63 -5.4 1,948,271 - SGL_RS11085 0.63 -4.9 1,948,350 + SGL_RS11085 0.68 -5.2 1,948,378 - SGL_RS11085 0.70 -3.9 1,948,379 + SGL_RS11085 0.70 -6.4 1,948,385 - SGL_RS11085 0.71 -6.8 1,948,385 - SGL_RS11085 0.71 -5.3 1,948,385 - SGL_RS11085 0.71 -6.1 1,948,385 - SGL_RS11085 0.71 -7.7 1,948,592 + SGL_RS11085 0.84 -8.0 1,948,610 - SGL_RS11085 0.86 -5.6 1,948,797 + -6.9 1,948,805 - -6.7 1,949,128 - SGL_RS20205 0.10 -3.2 1,949,536 + +0.7 1,949,536 + +0.3 1,949,554 - -0.5 1,949,565 - +0.0
Or see this region's nucleotide sequence