Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10445

Experiment: Chloride 800 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10440 and SGL_RS10445 are separated by 240 nucleotidesSGL_RS10445 and SGL_RS10450 are separated by 51 nucleotidesSGL_RS10450 and SGL_RS10455 are separated by 209 nucleotides SGL_RS10440: SGL_RS10440 - photosystem II q(b) protein, at 1,818,915 to 1,819,997 _RS10440 SGL_RS10445: SGL_RS10445 - L-threonylcarbamoyladenylate synthase, at 1,820,238 to 1,820,837 _RS10445 SGL_RS10450: SGL_RS10450 - TPM domain-containing protein, at 1,820,889 to 1,821,614 _RS10450 SGL_RS10455: SGL_RS10455 - hypothetical protein, at 1,821,824 to 1,822,036 _RS10455 Position (kb) 1820 1821Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1820.209 kb on - strandat 1820.311 kb on - strand, within SGL_RS10445at 1820.316 kb on + strand, within SGL_RS10445at 1820.324 kb on - strand, within SGL_RS10445at 1820.456 kb on - strand, within SGL_RS10445at 1820.492 kb on + strand, within SGL_RS10445at 1820.808 kb on + strandat 1820.963 kb on - strand, within SGL_RS10450at 1820.968 kb on - strand, within SGL_RS10450at 1821.189 kb on - strand, within SGL_RS10450at 1821.210 kb on + strand, within SGL_RS10450at 1821.241 kb on - strand, within SGL_RS10450at 1821.512 kb on + strand, within SGL_RS10450at 1821.646 kb on - strandat 1821.649 kb on + strandat 1821.676 kb on + strandat 1821.748 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 800 mM
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1,820,209 - +0.1
1,820,311 - SGL_RS10445 0.12 -3.6
1,820,316 + SGL_RS10445 0.13 -3.3
1,820,324 - SGL_RS10445 0.14 -4.4
1,820,456 - SGL_RS10445 0.36 -1.6
1,820,492 + SGL_RS10445 0.42 -4.1
1,820,808 + -2.8
1,820,963 - SGL_RS10450 0.10 -0.1
1,820,968 - SGL_RS10450 0.11 +0.2
1,821,189 - SGL_RS10450 0.41 +0.1
1,821,210 + SGL_RS10450 0.44 -2.5
1,821,241 - SGL_RS10450 0.48 +0.1
1,821,512 + SGL_RS10450 0.86 -1.7
1,821,646 - -1.3
1,821,649 + +0.3
1,821,676 + -0.7
1,821,748 - -0.0

Or see this region's nucleotide sequence