Experiment: Chloride 800 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02700 and SGL_RS02705 are separated by 68 nucleotides SGL_RS02705 and SGL_RS02710 are separated by 210 nucleotides SGL_RS02710 and SGL_RS02715 are separated by 51 nucleotides
SGL_RS02700: SGL_RS02700 - F0F1 ATP synthase subunit A, at 176,693 to 177,523
_RS02700
SGL_RS02705: SGL_RS02705 - ATP synthase subunit I, at 177,592 to 178,098
_RS02705
SGL_RS02710: SGL_RS02710 - 50S ribosome-binding GTPase, at 178,309 to 179,682
_RS02710
SGL_RS02715: SGL_RS02715 - HAMP domain-containing sensor histidine kinase, at 179,734 to 181,047
_RS02715
Position (kb) 178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 178.262 kb on + strand at 178.275 kb on + strand at 178.275 kb on + strand at 178.275 kb on + strand at 178.375 kb on - strand at 178.400 kb on - strand at 178.403 kb on + strand at 178.403 kb on + strand at 178.468 kb on - strand, within SGL_RS02710 at 178.468 kb on - strand, within SGL_RS02710 at 178.724 kb on + strand, within SGL_RS02710 at 178.805 kb on + strand, within SGL_RS02710 at 178.806 kb on + strand, within SGL_RS02710 at 178.806 kb on + strand, within SGL_RS02710 at 179.007 kb on + strand, within SGL_RS02710 at 179.404 kb on - strand, within SGL_RS02710 at 179.455 kb on + strand, within SGL_RS02710 at 179.538 kb on + strand, within SGL_RS02710 at 179.698 kb on + strand at 179.698 kb on + strand at 179.707 kb on - strand at 179.754 kb on - strand at 179.762 kb on + strand at 179.770 kb on - strand at 179.786 kb on + strand at 179.845 kb on - strand at 179.885 kb on + strand, within SGL_RS02715 at 179.996 kb on - strand, within SGL_RS02715 at 180.022 kb on + strand, within SGL_RS02715 at 180.376 kb on + strand, within SGL_RS02715 at 180.396 kb on - strand, within SGL_RS02715 at 180.396 kb on - strand, within SGL_RS02715 at 180.396 kb on - strand, within SGL_RS02715 at 180.504 kb on + strand, within SGL_RS02715
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 800 mM remove 178,262 + -0.8 178,275 + -0.2 178,275 + -0.3 178,275 + -0.5 178,375 - -2.1 178,400 - -1.6 178,403 + -2.4 178,403 + -2.5 178,468 - SGL_RS02710 0.12 -1.7 178,468 - SGL_RS02710 0.12 -1.6 178,724 + SGL_RS02710 0.30 -2.8 178,805 + SGL_RS02710 0.36 -1.5 178,806 + SGL_RS02710 0.36 -2.1 178,806 + SGL_RS02710 0.36 -1.9 179,007 + SGL_RS02710 0.51 -2.9 179,404 - SGL_RS02710 0.80 -1.8 179,455 + SGL_RS02710 0.83 -3.5 179,538 + SGL_RS02710 0.89 -1.6 179,698 + -0.1 179,698 + +0.3 179,707 - -0.8 179,754 - +0.6 179,762 + -0.3 179,770 - -0.7 179,786 + +0.1 179,845 - +0.0 179,885 + SGL_RS02715 0.11 +0.0 179,996 - SGL_RS02715 0.20 +0.2 180,022 + SGL_RS02715 0.22 -0.1 180,376 + SGL_RS02715 0.49 -0.1 180,396 - SGL_RS02715 0.50 +0.1 180,396 - SGL_RS02715 0.50 -0.2 180,396 - SGL_RS02715 0.50 +0.2 180,504 + SGL_RS02715 0.59 -0.3
Or see this region's nucleotide sequence