Experiment: Chloride 800 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02050 and SGL_RS02055 are separated by 124 nucleotides SGL_RS02055 and SGL_RS02060 overlap by 4 nucleotides SGL_RS02060 and SGL_RS02065 are separated by 27 nucleotides
SGL_RS02050: SGL_RS02050 - hypothetical protein, at 47,007 to 47,942
_RS02050
SGL_RS02055: SGL_RS02055 - DUF5615 family PIN-like protein, at 48,067 to 48,408
_RS02055
SGL_RS02060: SGL_RS02060 - DUF433 domain-containing protein, at 48,405 to 48,635
_RS02060
SGL_RS02065: SGL_RS02065 - DUF4336 domain-containing protein, at 48,663 to 49,868
_RS02065
Position (kb) 48
49 Strain fitness (log2 ratio) -2
-1
0
1 at 47.450 kb on + strand, within SGL_RS02050 at 47.651 kb on + strand, within SGL_RS02050 at 47.675 kb on + strand, within SGL_RS02050 at 48.222 kb on + strand, within SGL_RS02055 at 48.540 kb on + strand, within SGL_RS02060 at 48.691 kb on - strand at 48.716 kb on + strand at 48.800 kb on - strand, within SGL_RS02065 at 48.859 kb on - strand, within SGL_RS02065 at 48.859 kb on - strand, within SGL_RS02065 at 48.985 kb on + strand, within SGL_RS02065 at 49.102 kb on - strand, within SGL_RS02065 at 49.189 kb on + strand, within SGL_RS02065 at 49.189 kb on + strand, within SGL_RS02065 at 49.197 kb on - strand, within SGL_RS02065 at 49.276 kb on - strand, within SGL_RS02065 at 49.481 kb on + strand, within SGL_RS02065 at 49.565 kb on + strand, within SGL_RS02065 at 49.565 kb on + strand, within SGL_RS02065
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 800 mM remove 47,450 + SGL_RS02050 0.47 +0.0 47,651 + SGL_RS02050 0.69 +0.6 47,675 + SGL_RS02050 0.71 -0.1 48,222 + SGL_RS02055 0.45 -0.4 48,540 + SGL_RS02060 0.58 -2.4 48,691 - -0.2 48,716 + +0.0 48,800 - SGL_RS02065 0.11 +0.2 48,859 - SGL_RS02065 0.16 -0.0 48,859 - SGL_RS02065 0.16 -0.1 48,985 + SGL_RS02065 0.27 +0.5 49,102 - SGL_RS02065 0.36 +0.3 49,189 + SGL_RS02065 0.44 -0.4 49,189 + SGL_RS02065 0.44 -0.1 49,197 - SGL_RS02065 0.44 +0.1 49,276 - SGL_RS02065 0.51 -0.2 49,481 + SGL_RS02065 0.68 +0.2 49,565 + SGL_RS02065 0.75 -0.1 49,565 + SGL_RS02065 0.75 +0.1
Or see this region's nucleotide sequence