Experiment: Chloride 800 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS01820 and SGL_RS01825 are separated by 476 nucleotides SGL_RS01825 and SGL_RS01830 are separated by 140 nucleotides SGL_RS01830 and SGL_RS01835 are separated by 21 nucleotides
SGL_RS01820: SGL_RS01820 - Fic family protein, at 92,267 to 93,343
_RS01820
SGL_RS01825: SGL_RS01825 - type II toxin-antitoxin system HigB family toxin, at 93,820 to 94,140
_RS01825
SGL_RS01830: SGL_RS01830 - transcriptional regulator, at 94,281 to 94,700
_RS01830
SGL_RS01835: SGL_RS01835 - type I restriction endonuclease subunit R, at 94,722 to 97,901
_RS01835
Position (kb)
93
94
95 Strain fitness (log2 ratio)
-2
-1
0
1 at 92.853 kb on - strand, within SGL_RS01820 at 92.860 kb on + strand, within SGL_RS01820 at 92.898 kb on - strand, within SGL_RS01820 at 92.910 kb on - strand, within SGL_RS01820 at 93.213 kb on + strand, within SGL_RS01820 at 93.221 kb on - strand, within SGL_RS01820 at 93.356 kb on + strand at 93.356 kb on + strand at 93.356 kb on + strand at 93.516 kb on - strand at 93.542 kb on + strand at 93.576 kb on - strand at 93.605 kb on + strand at 93.605 kb on + strand at 93.613 kb on - strand at 93.618 kb on - strand at 93.625 kb on - strand at 93.828 kb on - strand at 93.849 kb on - strand at 93.951 kb on - strand, within SGL_RS01825 at 94.626 kb on - strand, within SGL_RS01830 at 94.797 kb on + strand at 94.831 kb on + strand at 94.839 kb on - strand at 94.858 kb on + strand at 94.896 kb on + strand at 94.906 kb on + strand at 94.931 kb on + strand at 95.031 kb on - strand at 95.034 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 800 mM remove 92,853 - SGL_RS01820 0.54 -0.1 92,860 + SGL_RS01820 0.55 -1.8 92,898 - SGL_RS01820 0.59 -1.0 92,910 - SGL_RS01820 0.60 +0.2 93,213 + SGL_RS01820 0.88 -0.8 93,221 - SGL_RS01820 0.89 -0.0 93,356 + +0.2 93,356 + -0.6 93,356 + -0.2 93,516 - +0.7 93,542 + -0.5 93,576 - -0.8 93,605 + +0.2 93,605 + -0.4 93,613 - +0.1 93,618 - -0.2 93,625 - -0.6 93,828 - -0.3 93,849 - -0.2 93,951 - SGL_RS01825 0.41 -1.3 94,626 - SGL_RS01830 0.82 -2.3 94,797 + -0.3 94,831 + -0.7 94,839 - -0.0 94,858 + +0.2 94,896 + -0.4 94,906 + +0.0 94,931 + +0.1 95,031 - -0.0 95,034 + +0.1
Or see this region's nucleotide sequence