Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS01825

Experiment: Chloride 800 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS01820 and SGL_RS01825 are separated by 476 nucleotidesSGL_RS01825 and SGL_RS01830 are separated by 140 nucleotidesSGL_RS01830 and SGL_RS01835 are separated by 21 nucleotides SGL_RS01820: SGL_RS01820 - Fic family protein, at 92,267 to 93,343 _RS01820 SGL_RS01825: SGL_RS01825 - type II toxin-antitoxin system HigB family toxin, at 93,820 to 94,140 _RS01825 SGL_RS01830: SGL_RS01830 - transcriptional regulator, at 94,281 to 94,700 _RS01830 SGL_RS01835: SGL_RS01835 - type I restriction endonuclease subunit R, at 94,722 to 97,901 _RS01835 Position (kb) 93 94 95Strain fitness (log2 ratio) -2 -1 0 1at 92.853 kb on - strand, within SGL_RS01820at 92.860 kb on + strand, within SGL_RS01820at 92.898 kb on - strand, within SGL_RS01820at 92.910 kb on - strand, within SGL_RS01820at 93.213 kb on + strand, within SGL_RS01820at 93.221 kb on - strand, within SGL_RS01820at 93.356 kb on + strandat 93.356 kb on + strandat 93.356 kb on + strandat 93.516 kb on - strandat 93.542 kb on + strandat 93.576 kb on - strandat 93.605 kb on + strandat 93.605 kb on + strandat 93.613 kb on - strandat 93.618 kb on - strandat 93.625 kb on - strandat 93.828 kb on - strandat 93.849 kb on - strandat 93.951 kb on - strand, within SGL_RS01825at 94.626 kb on - strand, within SGL_RS01830at 94.797 kb on + strandat 94.831 kb on + strandat 94.839 kb on - strandat 94.858 kb on + strandat 94.896 kb on + strandat 94.906 kb on + strandat 94.931 kb on + strandat 95.031 kb on - strandat 95.034 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 800 mM
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92,853 - SGL_RS01820 0.54 -0.1
92,860 + SGL_RS01820 0.55 -1.8
92,898 - SGL_RS01820 0.59 -1.0
92,910 - SGL_RS01820 0.60 +0.2
93,213 + SGL_RS01820 0.88 -0.8
93,221 - SGL_RS01820 0.89 -0.0
93,356 + +0.2
93,356 + -0.6
93,356 + -0.2
93,516 - +0.7
93,542 + -0.5
93,576 - -0.8
93,605 + +0.2
93,605 + -0.4
93,613 - +0.1
93,618 - -0.2
93,625 - -0.6
93,828 - -0.3
93,849 - -0.2
93,951 - SGL_RS01825 0.41 -1.3
94,626 - SGL_RS01830 0.82 -2.3
94,797 + -0.3
94,831 + -0.7
94,839 - -0.0
94,858 + +0.2
94,896 + -0.4
94,906 + +0.0
94,931 + +0.1
95,031 - -0.0
95,034 + +0.1

Or see this region's nucleotide sequence