Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15420 and SGL_RS15425 are separated by 130 nucleotides SGL_RS15425 and SGL_RS15430 are separated by 62 nucleotides
SGL_RS15420: SGL_RS15420 - DevA family ABC transporter ATP-binding protein, at 2,911,122 to 2,911,859
_RS15420
SGL_RS15425: SGL_RS15425 - cobalamin biosynthesis protein CobW, at 2,911,990 to 2,913,048
_RS15425
SGL_RS15430: SGL_RS15430 - Ycf66 family protein, at 2,913,111 to 2,914,124
_RS15430
Position (kb)
2911
2912
2913
2914 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2911.146 kb on - strand at 2911.504 kb on + strand, within SGL_RS15420 at 2911.623 kb on + strand, within SGL_RS15420 at 2911.631 kb on - strand, within SGL_RS15420 at 2911.631 kb on - strand, within SGL_RS15420 at 2911.902 kb on - strand at 2912.025 kb on + strand at 2912.092 kb on + strand at 2912.133 kb on - strand, within SGL_RS15425 at 2912.240 kb on - strand, within SGL_RS15425 at 2912.240 kb on - strand, within SGL_RS15425 at 2912.334 kb on + strand, within SGL_RS15425 at 2912.337 kb on - strand, within SGL_RS15425 at 2912.622 kb on - strand, within SGL_RS15425 at 2912.779 kb on + strand, within SGL_RS15425 at 2912.842 kb on + strand, within SGL_RS15425 at 2912.865 kb on + strand, within SGL_RS15425 at 2912.910 kb on + strand, within SGL_RS15425 at 2912.919 kb on - strand, within SGL_RS15425 at 2912.926 kb on - strand, within SGL_RS15425 at 2912.960 kb on - strand at 2912.962 kb on + strand at 2913.042 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 2,911,146 - +0.1 2,911,504 + SGL_RS15420 0.52 +0.0 2,911,623 + SGL_RS15420 0.68 -0.2 2,911,631 - SGL_RS15420 0.69 +0.5 2,911,631 - SGL_RS15420 0.69 +0.3 2,911,902 - +0.6 2,912,025 + -2.7 2,912,092 + -0.8 2,912,133 - SGL_RS15425 0.14 -3.7 2,912,240 - SGL_RS15425 0.24 -3.2 2,912,240 - SGL_RS15425 0.24 -1.7 2,912,334 + SGL_RS15425 0.32 -1.9 2,912,337 - SGL_RS15425 0.33 -1.8 2,912,622 - SGL_RS15425 0.60 -3.7 2,912,779 + SGL_RS15425 0.75 -2.4 2,912,842 + SGL_RS15425 0.80 -2.0 2,912,865 + SGL_RS15425 0.83 -1.8 2,912,910 + SGL_RS15425 0.87 -1.7 2,912,919 - SGL_RS15425 0.88 -3.3 2,912,926 - SGL_RS15425 0.88 +0.8 2,912,960 - -1.3 2,912,962 + -2.3 2,913,042 + -0.2
Or see this region's nucleotide sequence