Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13360 and SGL_RS13365 are separated by 222 nucleotides SGL_RS13365 and SGL_RS13370 are separated by 66 nucleotides SGL_RS13370 and SGL_RS13375 are separated by 80 nucleotides
SGL_RS13360: SGL_RS13360 - DUF1190 domain-containing protein, at 2,463,555 to 2,464,304
_RS13360
SGL_RS13365: SGL_RS13365 - flavin reductase family protein, at 2,464,527 to 2,465,009
_RS13365
SGL_RS13370: SGL_RS13370 - exonuclease SbcCD subunit D, at 2,465,076 to 2,466,326
_RS13370
SGL_RS13375: SGL_RS13375 - ATP-dependent Clp protease ATP-binding subunit, at 2,466,407 to 2,468,872
_RS13375
Position (kb)
2465
2466
2467 Strain fitness (log2 ratio)
-2
-1
0
1 at 2464.077 kb on - strand, within SGL_RS13360 at 2464.107 kb on + strand, within SGL_RS13360 at 2464.576 kb on + strand, within SGL_RS13365 at 2464.675 kb on - strand, within SGL_RS13365 at 2465.032 kb on + strand at 2465.040 kb on - strand at 2465.098 kb on - strand at 2465.262 kb on + strand, within SGL_RS13370 at 2465.877 kb on + strand, within SGL_RS13370 at 2466.057 kb on + strand, within SGL_RS13370 at 2466.157 kb on + strand, within SGL_RS13370 at 2466.202 kb on + strand at 2466.209 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 2,464,077 - SGL_RS13360 0.70 -0.0 2,464,107 + SGL_RS13360 0.74 -0.1 2,464,576 + SGL_RS13365 0.10 -0.0 2,464,675 - SGL_RS13365 0.31 +0.3 2,465,032 + +0.1 2,465,040 - -0.1 2,465,098 - +0.0 2,465,262 + SGL_RS13370 0.15 -0.4 2,465,877 + SGL_RS13370 0.64 -0.5 2,466,057 + SGL_RS13370 0.78 -1.4 2,466,157 + SGL_RS13370 0.86 -2.2 2,466,202 + -1.1 2,466,209 + -1.9
Or see this region's nucleotide sequence