Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS12330 and SGL_RS19240 are separated by 249 nucleotides SGL_RS19240 and SGL_RS12335 are separated by 76 nucleotides SGL_RS12335 and SGL_RS12340 are separated by 67 nucleotides
SGL_RS12330: SGL_RS12330 - IS5 family transposase, at 2,226,619 to 2,227,404
_RS12330
SGL_RS19240: SGL_RS19240 - ABC transporter ATP-binding protein, at 2,227,654 to 2,227,752
_RS19240
SGL_RS12335: SGL_RS12335 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 2,227,829 to 2,228,377
_RS12335
SGL_RS12340: SGL_RS12340 - hypothetical protein, at 2,228,445 to 2,230,328
_RS12340
Position (kb)
2227
2228
2229 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2227.547 kb on - strand at 2227.609 kb on - strand at 2227.816 kb on - strand at 2228.171 kb on + strand, within SGL_RS12335 at 2228.205 kb on + strand, within SGL_RS12335 at 2228.213 kb on + strand, within SGL_RS12335 at 2228.213 kb on + strand, within SGL_RS12335 at 2228.218 kb on + strand, within SGL_RS12335 at 2228.218 kb on + strand, within SGL_RS12335 at 2228.221 kb on - strand, within SGL_RS12335 at 2228.243 kb on - strand, within SGL_RS12335 at 2228.247 kb on + strand, within SGL_RS12335 at 2228.271 kb on - strand, within SGL_RS12335 at 2228.431 kb on + strand at 2228.473 kb on - strand at 2228.538 kb on + strand at 2228.715 kb on + strand, within SGL_RS12340 at 2228.755 kb on + strand, within SGL_RS12340 at 2228.815 kb on + strand, within SGL_RS12340 at 2228.857 kb on - strand, within SGL_RS12340 at 2228.952 kb on + strand, within SGL_RS12340 at 2229.190 kb on - strand, within SGL_RS12340 at 2229.216 kb on + strand, within SGL_RS12340
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 2,227,547 - +0.2 2,227,609 - +0.4 2,227,816 - +0.3 2,228,171 + SGL_RS12335 0.62 -2.9 2,228,205 + SGL_RS12335 0.68 -4.3 2,228,213 + SGL_RS12335 0.70 -4.3 2,228,213 + SGL_RS12335 0.70 -2.6 2,228,218 + SGL_RS12335 0.71 -1.5 2,228,218 + SGL_RS12335 0.71 -6.2 2,228,221 - SGL_RS12335 0.71 -3.5 2,228,243 - SGL_RS12335 0.75 -3.6 2,228,247 + SGL_RS12335 0.76 -2.3 2,228,271 - SGL_RS12335 0.81 -6.0 2,228,431 + -1.3 2,228,473 - -0.4 2,228,538 + -1.1 2,228,715 + SGL_RS12340 0.14 -0.5 2,228,755 + SGL_RS12340 0.16 -1.6 2,228,815 + SGL_RS12340 0.20 -1.0 2,228,857 - SGL_RS12340 0.22 -0.6 2,228,952 + SGL_RS12340 0.27 -0.7 2,229,190 - SGL_RS12340 0.40 -0.8 2,229,216 + SGL_RS12340 0.41 -0.4
Or see this region's nucleotide sequence