Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09965 and SGL_RS09970 are separated by 16 nucleotides SGL_RS09970 and SGL_RS09975 are separated by 30 nucleotides SGL_RS09975 and SGL_RS09980 are separated by 92 nucleotides SGL_RS09980 and SGL_RS09985 are separated by 102 nucleotides
SGL_RS09965: SGL_RS09965 - GTP-binding protein, at 1,716,932 to 1,718,293
_RS09965
SGL_RS09970: SGL_RS09970 - DUF29 domain-containing protein, at 1,718,310 to 1,718,789
_RS09970
SGL_RS09975: SGL_RS09975 - DUF29 domain-containing protein, at 1,718,820 to 1,719,263
_RS09975
SGL_RS09980: SGL_RS09980 - ssl1498 family light-harvesting-like protein, at 1,719,356 to 1,719,541
_RS09980
SGL_RS09985: SGL_RS09985 - cation diffusion facilitator family transporter, at 1,719,644 to 1,720,576
_RS09985
Position (kb) 1718
1719 Strain fitness (log2 ratio) -2
-1
0
1 at 1718.275 kb on - strand at 1718.361 kb on + strand, within SGL_RS09970 at 1718.408 kb on - strand, within SGL_RS09970 at 1718.475 kb on - strand, within SGL_RS09970 at 1718.722 kb on + strand, within SGL_RS09970 at 1718.782 kb on - strand at 1718.866 kb on + strand, within SGL_RS09975 at 1718.919 kb on + strand, within SGL_RS09975 at 1718.933 kb on - strand, within SGL_RS09975 at 1718.980 kb on - strand, within SGL_RS09975 at 1718.987 kb on - strand, within SGL_RS09975 at 1719.015 kb on - strand, within SGL_RS09975 at 1719.056 kb on - strand, within SGL_RS09975 at 1719.608 kb on - strand at 1719.713 kb on - strand at 1719.717 kb on + strand at 1719.724 kb on + strand at 1719.750 kb on - strand, within SGL_RS09985
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 1,718,275 - -1.2 1,718,361 + SGL_RS09970 0.11 -0.9 1,718,408 - SGL_RS09970 0.20 -0.8 1,718,475 - SGL_RS09970 0.34 +0.0 1,718,722 + SGL_RS09970 0.86 -2.5 1,718,782 - -0.5 1,718,866 + SGL_RS09975 0.10 -1.5 1,718,919 + SGL_RS09975 0.22 -0.9 1,718,933 - SGL_RS09975 0.25 -0.3 1,718,980 - SGL_RS09975 0.36 -0.4 1,718,987 - SGL_RS09975 0.38 -0.0 1,719,015 - SGL_RS09975 0.44 -0.3 1,719,056 - SGL_RS09975 0.53 +0.3 1,719,608 - -0.0 1,719,713 - -0.7 1,719,717 + +0.2 1,719,724 + +0.2 1,719,750 - SGL_RS09985 0.11 +1.0
Or see this region's nucleotide sequence