Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06585 and SGL_RS06590 are separated by 74 nucleotides SGL_RS06590 and SGL_RS06595 are separated by 85 nucleotides
SGL_RS06585: SGL_RS06585 - nitrate ABC transporter ATP-binding protein, at 1,006,234 to 1,008,246
_RS06585
SGL_RS06590: SGL_RS06590 - nitrate ABC transporter permease, at 1,008,321 to 1,009,148
_RS06590
SGL_RS06595: SGL_RS06595 - CmpA/NrtA family ABC transporter substrate-binding protein, at 1,009,234 to 1,010,574
_RS06595
Position (kb)
1008
1009
1010 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1007.660 kb on - strand, within SGL_RS06585 at 1007.864 kb on + strand, within SGL_RS06585 at 1007.869 kb on + strand, within SGL_RS06585 at 1008.187 kb on - strand at 1008.438 kb on + strand, within SGL_RS06590 at 1008.438 kb on + strand, within SGL_RS06590 at 1008.647 kb on - strand, within SGL_RS06590 at 1008.724 kb on - strand, within SGL_RS06590 at 1008.756 kb on + strand, within SGL_RS06590 at 1008.842 kb on + strand, within SGL_RS06590 at 1008.866 kb on + strand, within SGL_RS06590 at 1008.886 kb on - strand, within SGL_RS06590 at 1008.991 kb on + strand, within SGL_RS06590 at 1008.999 kb on - strand, within SGL_RS06590 at 1009.002 kb on + strand, within SGL_RS06590 at 1009.200 kb on - strand at 1009.272 kb on - strand at 1009.272 kb on - strand at 1009.395 kb on - strand, within SGL_RS06595 at 1009.395 kb on - strand, within SGL_RS06595 at 1009.724 kb on + strand, within SGL_RS06595 at 1009.852 kb on - strand, within SGL_RS06595 at 1010.014 kb on - strand, within SGL_RS06595 at 1010.060 kb on - strand, within SGL_RS06595
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 1,007,660 - SGL_RS06585 0.71 -3.1 1,007,864 + SGL_RS06585 0.81 -0.6 1,007,869 + SGL_RS06585 0.81 -2.8 1,008,187 - -2.6 1,008,438 + SGL_RS06590 0.14 -1.2 1,008,438 + SGL_RS06590 0.14 -2.6 1,008,647 - SGL_RS06590 0.39 -2.8 1,008,724 - SGL_RS06590 0.49 -3.6 1,008,756 + SGL_RS06590 0.53 -4.7 1,008,842 + SGL_RS06590 0.63 -1.2 1,008,866 + SGL_RS06590 0.66 -3.0 1,008,886 - SGL_RS06590 0.68 -3.5 1,008,991 + SGL_RS06590 0.81 -0.8 1,008,999 - SGL_RS06590 0.82 -2.0 1,009,002 + SGL_RS06590 0.82 -4.0 1,009,200 - -0.5 1,009,272 - -3.2 1,009,272 - -3.2 1,009,395 - SGL_RS06595 0.12 -3.8 1,009,395 - SGL_RS06595 0.12 -2.9 1,009,724 + SGL_RS06595 0.37 -4.8 1,009,852 - SGL_RS06595 0.46 -3.0 1,010,014 - SGL_RS06595 0.58 -3.8 1,010,060 - SGL_RS06595 0.62 -4.5
Or see this region's nucleotide sequence