Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06105

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06095 and SGL_RS19560 are separated by 20 nucleotidesSGL_RS19560 and SGL_RS06105 are separated by 350 nucleotidesSGL_RS06105 and SGL_RS06110 are separated by 68 nucleotides SGL_RS06095: SGL_RS06095 - type II 3-dehydroquinate dehydratase, at 903,148 to 903,606 _RS06095 SGL_RS19560: SGL_RS19560 - hypothetical protein, at 903,627 to 903,764 _RS19560 SGL_RS06105: SGL_RS06105 - magnesium transporter, at 904,115 to 905,506 _RS06105 SGL_RS06110: SGL_RS06110 - glycosyltransferase family 4 protein, at 905,575 to 906,762 _RS06110 Position (kb) 904 905 906Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 903.353 kb on - strand, within SGL_RS06095at 903.408 kb on - strand, within SGL_RS06095at 903.516 kb on + strand, within SGL_RS06095at 903.687 kb on - strand, within SGL_RS19560at 904.044 kb on - strandat 904.073 kb on - strandat 904.080 kb on + strandat 904.119 kb on - strandat 904.134 kb on - strandat 904.134 kb on - strandat 904.141 kb on + strandat 904.260 kb on + strand, within SGL_RS06105at 904.306 kb on - strand, within SGL_RS06105at 904.364 kb on + strand, within SGL_RS06105at 904.366 kb on + strand, within SGL_RS06105at 904.449 kb on - strand, within SGL_RS06105at 904.458 kb on - strand, within SGL_RS06105at 904.510 kb on + strand, within SGL_RS06105at 904.577 kb on - strand, within SGL_RS06105at 904.582 kb on - strand, within SGL_RS06105at 904.613 kb on + strand, within SGL_RS06105at 904.621 kb on - strand, within SGL_RS06105at 904.621 kb on - strand, within SGL_RS06105at 904.695 kb on + strand, within SGL_RS06105at 904.701 kb on + strand, within SGL_RS06105at 904.783 kb on + strand, within SGL_RS06105at 904.823 kb on - strand, within SGL_RS06105at 904.912 kb on - strand, within SGL_RS06105at 904.928 kb on + strand, within SGL_RS06105at 904.947 kb on - strand, within SGL_RS06105at 904.962 kb on - strand, within SGL_RS06105at 905.037 kb on + strand, within SGL_RS06105at 905.045 kb on - strand, within SGL_RS06105at 905.107 kb on + strand, within SGL_RS06105at 905.115 kb on - strand, within SGL_RS06105at 905.152 kb on + strand, within SGL_RS06105at 905.152 kb on + strand, within SGL_RS06105at 905.160 kb on - strand, within SGL_RS06105at 905.160 kb on - strand, within SGL_RS06105at 905.209 kb on - strand, within SGL_RS06105at 905.261 kb on - strand, within SGL_RS06105at 905.261 kb on - strand, within SGL_RS06105at 905.271 kb on - strand, within SGL_RS06105at 905.279 kb on + strand, within SGL_RS06105at 905.307 kb on + strand, within SGL_RS06105at 905.336 kb on - strand, within SGL_RS06105at 905.346 kb on - strand, within SGL_RS06105at 905.874 kb on - strand, within SGL_RS06110at 905.902 kb on + strand, within SGL_RS06110at 906.346 kb on + strand, within SGL_RS06110at 906.379 kb on + strand, within SGL_RS06110at 906.379 kb on + strand, within SGL_RS06110at 906.463 kb on + strand, within SGL_RS06110at 906.482 kb on - strand, within SGL_RS06110

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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903,353 - SGL_RS06095 0.45 -1.1
903,408 - SGL_RS06095 0.57 -3.6
903,516 + SGL_RS06095 0.80 -2.5
903,687 - SGL_RS19560 0.43 -2.7
904,044 - -0.1
904,073 - +0.0
904,080 + -0.1
904,119 - +0.2
904,134 - -3.0
904,134 - -3.0
904,141 + -1.1
904,260 + SGL_RS06105 0.10 -2.8
904,306 - SGL_RS06105 0.14 -2.3
904,364 + SGL_RS06105 0.18 -2.9
904,366 + SGL_RS06105 0.18 -1.7
904,449 - SGL_RS06105 0.24 -1.9
904,458 - SGL_RS06105 0.25 -1.8
904,510 + SGL_RS06105 0.28 -2.4
904,577 - SGL_RS06105 0.33 -2.8
904,582 - SGL_RS06105 0.34 -3.3
904,613 + SGL_RS06105 0.36 -2.8
904,621 - SGL_RS06105 0.36 -2.3
904,621 - SGL_RS06105 0.36 -2.4
904,695 + SGL_RS06105 0.42 -3.0
904,701 + SGL_RS06105 0.42 -2.9
904,783 + SGL_RS06105 0.48 -2.7
904,823 - SGL_RS06105 0.51 -3.2
904,912 - SGL_RS06105 0.57 -1.8
904,928 + SGL_RS06105 0.58 -2.7
904,947 - SGL_RS06105 0.60 -2.5
904,962 - SGL_RS06105 0.61 -2.7
905,037 + SGL_RS06105 0.66 -2.6
905,045 - SGL_RS06105 0.67 -4.0
905,107 + SGL_RS06105 0.71 -3.1
905,115 - SGL_RS06105 0.72 -3.4
905,152 + SGL_RS06105 0.74 -3.0
905,152 + SGL_RS06105 0.74 -2.4
905,160 - SGL_RS06105 0.75 -2.7
905,160 - SGL_RS06105 0.75 -3.5
905,209 - SGL_RS06105 0.79 -2.3
905,261 - SGL_RS06105 0.82 -2.5
905,261 - SGL_RS06105 0.82 -3.0
905,271 - SGL_RS06105 0.83 -3.1
905,279 + SGL_RS06105 0.84 -3.3
905,307 + SGL_RS06105 0.86 -3.5
905,336 - SGL_RS06105 0.88 -2.9
905,346 - SGL_RS06105 0.88 -2.4
905,874 - SGL_RS06110 0.25 +1.1
905,902 + SGL_RS06110 0.28 +0.0
906,346 + SGL_RS06110 0.65 -0.1
906,379 + SGL_RS06110 0.68 +0.0
906,379 + SGL_RS06110 0.68 +0.4
906,463 + SGL_RS06110 0.75 -0.9
906,482 - SGL_RS06110 0.76 +0.2

Or see this region's nucleotide sequence