Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02655 and SGL_RS02660 are separated by 12 nucleotides SGL_RS02660 and SGL_RS02665 are separated by 5 nucleotides SGL_RS02665 and SGL_RS02670 are separated by 98 nucleotides
SGL_RS02655: SGL_RS02655 - S41 family peptidase, at 168,533 to 169,921
_RS02655
SGL_RS02660: SGL_RS02660 - L-threonylcarbamoyladenylate synthase, at 169,934 to 170,566
_RS02660
SGL_RS02665: SGL_RS02665 - nickel pincer cofactor biosynthesis protein LarC, at 170,572 to 171,840
_RS02665
SGL_RS02670: SGL_RS02670 - F0F1 ATP synthase subunit gamma, at 171,939 to 172,883
_RS02670
Position (kb) 170
171
172 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 169.585 kb on + strand, within SGL_RS02655 at 169.761 kb on + strand, within SGL_RS02655 at 169.969 kb on - strand at 170.164 kb on - strand, within SGL_RS02660 at 170.351 kb on - strand, within SGL_RS02660 at 170.377 kb on + strand, within SGL_RS02660 at 170.458 kb on - strand, within SGL_RS02660 at 170.482 kb on - strand, within SGL_RS02660 at 171.136 kb on + strand, within SGL_RS02665 at 171.514 kb on - strand, within SGL_RS02665 at 171.520 kb on + strand, within SGL_RS02665
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 169,585 + SGL_RS02655 0.76 -0.1 169,761 + SGL_RS02655 0.88 -0.2 169,969 - +0.2 170,164 - SGL_RS02660 0.36 +0.0 170,351 - SGL_RS02660 0.66 +0.1 170,377 + SGL_RS02660 0.70 +0.2 170,458 - SGL_RS02660 0.83 +0.0 170,482 - SGL_RS02660 0.87 +0.5 171,136 + SGL_RS02665 0.44 -2.5 171,514 - SGL_RS02665 0.74 -3.5 171,520 + SGL_RS02665 0.75 -3.0
Or see this region's nucleotide sequence