Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS20150

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11890 and SGL_RS20150 are separated by 38 nucleotidesSGL_RS20150 and SGL_RS11895 are separated by 137 nucleotidesSGL_RS11895 and SGL_RS11900 are separated by 125 nucleotides SGL_RS11890: SGL_RS11890 - NAD-binding protein, at 2,121,641 to 2,123,347 _RS11890 SGL_RS20150: SGL_RS20150 - hypothetical protein, at 2,123,386 to 2,123,508 _RS20150 SGL_RS11895: SGL_RS11895 - phage holin family protein, at 2,123,646 to 2,123,996 _RS11895 SGL_RS11900: SGL_RS11900 - radical SAM protein, at 2,124,122 to 2,124,973 _RS11900 Position (kb) 2123 2124Strain fitness (log2 ratio) -1 0 1at 2122.453 kb on - strand, within SGL_RS11890at 2122.639 kb on + strand, within SGL_RS11890at 2122.645 kb on - strand, within SGL_RS11890at 2122.706 kb on - strand, within SGL_RS11890at 2122.721 kb on - strand, within SGL_RS11890at 2122.757 kb on - strand, within SGL_RS11890at 2122.764 kb on + strand, within SGL_RS11890at 2122.770 kb on - strand, within SGL_RS11890at 2122.796 kb on - strand, within SGL_RS11890at 2123.005 kb on + strand, within SGL_RS11890at 2123.035 kb on - strand, within SGL_RS11890at 2123.038 kb on - strand, within SGL_RS11890at 2123.045 kb on - strand, within SGL_RS11890at 2123.047 kb on + strand, within SGL_RS11890at 2123.100 kb on + strand, within SGL_RS11890at 2123.180 kb on + strandat 2123.399 kb on + strand, within SGL_RS20150at 2123.400 kb on + strand, within SGL_RS20150at 2123.401 kb on - strand, within SGL_RS20150at 2123.407 kb on - strand, within SGL_RS20150at 2123.407 kb on - strand, within SGL_RS20150at 2123.408 kb on - strand, within SGL_RS20150at 2123.432 kb on - strand, within SGL_RS20150at 2123.438 kb on + strand, within SGL_RS20150at 2123.516 kb on - strandat 2123.548 kb on - strandat 2123.620 kb on + strandat 2123.840 kb on + strand, within SGL_RS11895at 2123.840 kb on + strand, within SGL_RS11895at 2123.959 kb on + strand, within SGL_RS11895at 2124.463 kb on - strand, within SGL_RS11900

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,122,453 - SGL_RS11890 0.48 +0.4
2,122,639 + SGL_RS11890 0.58 +0.4
2,122,645 - SGL_RS11890 0.59 -0.1
2,122,706 - SGL_RS11890 0.62 +0.4
2,122,721 - SGL_RS11890 0.63 +0.1
2,122,757 - SGL_RS11890 0.65 -0.0
2,122,764 + SGL_RS11890 0.66 -0.0
2,122,770 - SGL_RS11890 0.66 +0.0
2,122,796 - SGL_RS11890 0.68 -0.1
2,123,005 + SGL_RS11890 0.80 +0.3
2,123,035 - SGL_RS11890 0.82 +0.1
2,123,038 - SGL_RS11890 0.82 +0.3
2,123,045 - SGL_RS11890 0.82 +0.1
2,123,047 + SGL_RS11890 0.82 -0.3
2,123,100 + SGL_RS11890 0.85 +0.2
2,123,180 + +0.1
2,123,399 + SGL_RS20150 0.11 +0.1
2,123,400 + SGL_RS20150 0.11 -0.0
2,123,401 - SGL_RS20150 0.12 +0.4
2,123,407 - SGL_RS20150 0.17 +0.6
2,123,407 - SGL_RS20150 0.17 +0.4
2,123,408 - SGL_RS20150 0.18 +0.4
2,123,432 - SGL_RS20150 0.37 -0.1
2,123,438 + SGL_RS20150 0.42 +0.2
2,123,516 - +0.2
2,123,548 - +0.1
2,123,620 + -0.2
2,123,840 + SGL_RS11895 0.55 +0.3
2,123,840 + SGL_RS11895 0.55 +0.1
2,123,959 + SGL_RS11895 0.89 +0.6
2,124,463 - SGL_RS11900 0.40 -0.2

Or see this region's nucleotide sequence