Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08545 and SGL_RS19590 are separated by 376 nucleotides SGL_RS19590 and SGL_RS08555 are separated by 300 nucleotides SGL_RS08555 and SGL_RS08560 are separated by 93 nucleotides
SGL_RS08545: SGL_RS08545 - Uma2 family endonuclease, at 1,418,995 to 1,419,573
_RS08545
SGL_RS19590: SGL_RS19590 - hypothetical protein, at 1,419,950 to 1,420,249
_RS19590
SGL_RS08555: SGL_RS08555 - DUF2442 domain-containing protein, at 1,420,550 to 1,420,846
_RS08555
SGL_RS08560: SGL_RS08560 - RNA-guided endonuclease TnpB family protein, at 1,420,940 to 1,422,142
_RS08560
Position (kb) 1419
1420
1421 Strain fitness (log2 ratio) -1
0
1 at 1419.297 kb on + strand, within SGL_RS08545 at 1419.743 kb on - strand at 1419.784 kb on + strand at 1419.975 kb on + strand at 1420.069 kb on - strand, within SGL_RS19590 at 1420.112 kb on - strand, within SGL_RS19590 at 1420.316 kb on + strand at 1420.462 kb on + strand at 1420.465 kb on + strand at 1420.641 kb on - strand, within SGL_RS08555 at 1421.086 kb on + strand, within SGL_RS08560 at 1421.094 kb on - strand, within SGL_RS08560
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 1,419,297 + SGL_RS08545 0.52 +0.8 1,419,743 - -0.1 1,419,784 + -0.0 1,419,975 + +0.6 1,420,069 - SGL_RS19590 0.40 +0.8 1,420,112 - SGL_RS19590 0.54 +0.6 1,420,316 + +0.1 1,420,462 + -0.1 1,420,465 + -0.0 1,420,641 - SGL_RS08555 0.31 -0.5 1,421,086 + SGL_RS08560 0.12 -0.0 1,421,094 - SGL_RS08560 0.13 -0.1
Or see this region's nucleotide sequence