Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS19370

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS00375 and SGL_RS19370 are separated by 109 nucleotidesSGL_RS19370 and SGL_RS00385 are separated by 430 nucleotides SGL_RS00375: SGL_RS00375 - Rpn family recombination-promoting nuclease/putative transposase, at 80,783 to 81,613 _RS00375 SGL_RS19370: SGL_RS19370 - hypothetical protein, at 81,723 to 81,878 _RS19370 SGL_RS00385: SGL_RS00385 - AAA family ATPase, at 82,309 to 84,186 _RS00385 Position (kb) 81 82Strain fitness (log2 ratio) -1 0 1at 81.180 kb on + strand, within SGL_RS00375at 81.216 kb on - strand, within SGL_RS00375at 81.644 kb on - strandat 81.752 kb on - strand, within SGL_RS19370at 81.752 kb on - strand, within SGL_RS19370at 81.861 kb on + strand, within SGL_RS19370at 81.869 kb on - strandat 81.894 kb on - strandat 81.925 kb on - strandat 82.003 kb on - strandat 82.003 kb on - strandat 82.126 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
81,180 + SGL_RS00375 0.48 -0.2
81,216 - SGL_RS00375 0.52 +1.0
81,644 - +0.0
81,752 - SGL_RS19370 0.19 +0.9
81,752 - SGL_RS19370 0.19 +0.7
81,861 + SGL_RS19370 0.88 +0.2
81,869 - -0.5
81,894 - -0.1
81,925 - +0.3
82,003 - -0.3
82,003 - +0.9
82,126 - +0.2

Or see this region's nucleotide sequence