Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS12805 and SGL_RS12810 are separated by 27 nucleotides SGL_RS12810 and SGL_RS18985 are separated by 227 nucleotides SGL_RS18985 and SGL_RS12815 are separated by 63 nucleotides SGL_RS12815 and SGL_RS12820 are separated by 42 nucleotides
SGL_RS12805: SGL_RS12805 - DNA repair protein RecO, at 2,329,304 to 2,330,119
_RS12805
SGL_RS12810: SGL_RS12810 - hypothetical protein, at 2,330,147 to 2,330,359
_RS12810
SGL_RS18985: SGL_RS18985 - transposase, at 2,330,587 to 2,330,724
_RS18985
SGL_RS12815: SGL_RS12815 - cytochrome b/b6 domain-containing protein, at 2,330,788 to 2,331,462
_RS12815
SGL_RS12820: SGL_RS12820 - 1,4-alpha-glucan branching enzyme, at 2,331,505 to 2,333,817
_RS12820
Position (kb)
2330
2331 Strain fitness (log2 ratio)
-1
0
1 at 2330.423 kb on - strand at 2330.694 kb on + strand, within SGL_RS18985 at 2330.716 kb on - strand at 2330.957 kb on - strand, within SGL_RS12815 at 2331.016 kb on + strand, within SGL_RS12815 at 2331.024 kb on - strand, within SGL_RS12815 at 2331.024 kb on - strand, within SGL_RS12815 at 2331.063 kb on - strand, within SGL_RS12815 at 2331.115 kb on - strand, within SGL_RS12815 at 2331.175 kb on - strand, within SGL_RS12815 at 2331.178 kb on + strand, within SGL_RS12815 at 2331.225 kb on + strand, within SGL_RS12815 at 2331.243 kb on - strand, within SGL_RS12815 at 2331.243 kb on - strand, within SGL_RS12815 at 2331.404 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 2,330,423 - -0.0 2,330,694 + SGL_RS18985 0.78 +0.5 2,330,716 - +0.6 2,330,957 - SGL_RS12815 0.25 +0.0 2,331,016 + SGL_RS12815 0.34 +0.2 2,331,024 - SGL_RS12815 0.35 +0.2 2,331,024 - SGL_RS12815 0.35 +0.2 2,331,063 - SGL_RS12815 0.41 +0.1 2,331,115 - SGL_RS12815 0.48 +0.2 2,331,175 - SGL_RS12815 0.57 -0.0 2,331,178 + SGL_RS12815 0.58 +0.2 2,331,225 + SGL_RS12815 0.65 -0.2 2,331,243 - SGL_RS12815 0.67 -0.1 2,331,243 - SGL_RS12815 0.67 +0.3 2,331,404 + +0.3
Or see this region's nucleotide sequence