Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18725

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS05900 and SGL_RS18720 are separated by 131 nucleotidesSGL_RS18720 and SGL_RS18725 are separated by 22 nucleotidesSGL_RS18725 and SGL_RS05925 are separated by 215 nucleotides SGL_RS05900: SGL_RS05900 - ATP-binding cassette domain-containing protein, at 850,605 to 851,585 _RS05900 SGL_RS18720: SGL_RS18720 - IS1 family transposase, at 851,717 to 852,447 _RS18720 SGL_RS18725: SGL_RS18725 - IS5-like element IS5Sa2 family transposase, at 852,470 to 853,281 _RS18725 SGL_RS05925: SGL_RS05925 - DNA-directed RNA polymerase subunit beta'', at 853,497 to 857,450 _RS05925 Position (kb) 852 853 854Strain fitness (log2 ratio) -2 -1 0 1at 851.800 kb on + strand, within SGL_RS18720at 851.884 kb on - strand, within SGL_RS18720at 851.884 kb on - strand, within SGL_RS18720at 852.981 kb on + strand, within SGL_RS18725at 853.366 kb on + strandat 853.601 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
851,800 + SGL_RS18720 0.11 -0.1
851,884 - SGL_RS18720 0.23 -0.1
851,884 - SGL_RS18720 0.23 +0.0
852,981 + SGL_RS18725 0.63 +0.4
853,366 + +1.3
853,601 - -1.9

Or see this region's nucleotide sequence