Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18640

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02325 and SGL_RS18640 are separated by 440 nucleotidesSGL_RS18640 and SGL_RS02330 are separated by 262 nucleotides SGL_RS02325: SGL_RS02325 - McrB family protein, at 105,151 to 106,464 _RS02325 SGL_RS18640: SGL_RS18640 - transposase, at 106,905 to 107,208 _RS18640 SGL_RS02330: SGL_RS02330 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 107,471 to 108,325 _RS02330 Position (kb) 106 107 108Strain fitness (log2 ratio) -1 0 1at 106.092 kb on - strand, within SGL_RS02325at 106.496 kb on + strandat 107.050 kb on + strand, within SGL_RS18640at 107.112 kb on - strand, within SGL_RS18640at 107.275 kb on - strandat 107.328 kb on + strandat 107.550 kb on + strandat 107.558 kb on - strand, within SGL_RS02330at 107.711 kb on - strand, within SGL_RS02330at 107.782 kb on + strand, within SGL_RS02330at 107.822 kb on + strand, within SGL_RS02330at 107.855 kb on - strand, within SGL_RS02330at 107.933 kb on - strand, within SGL_RS02330at 108.158 kb on - strand, within SGL_RS02330

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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106,092 - SGL_RS02325 0.72 +0.1
106,496 + -0.2
107,050 + SGL_RS18640 0.48 +0.3
107,112 - SGL_RS18640 0.68 +0.7
107,275 - -0.0
107,328 + +0.0
107,550 + -0.8
107,558 - SGL_RS02330 0.10 +0.0
107,711 - SGL_RS02330 0.28 -0.7
107,782 + SGL_RS02330 0.36 -0.5
107,822 + SGL_RS02330 0.41 +0.4
107,855 - SGL_RS02330 0.45 -0.7
107,933 - SGL_RS02330 0.54 -0.4
108,158 - SGL_RS02330 0.80 +0.4

Or see this region's nucleotide sequence