Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16745

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16740 and SGL_RS16745 are separated by 70 nucleotidesSGL_RS16745 and SGL_RS16750 are separated by 301 nucleotides SGL_RS16740: SGL_RS16740 - tryptophan synthase subunit beta, at 3,213,272 to 3,214,510 _RS16740 SGL_RS16745: SGL_RS16745 - CHAT domain-containing protein, at 3,214,581 to 3,217,553 _RS16745 SGL_RS16750: SGL_RS16750 - ABC transporter ATP-binding protein, at 3,217,855 to 3,218,655 _RS16750 Position (kb) 3214 3215 3216 3217 3218Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3214.157 kb on + strand, within SGL_RS16740at 3214.439 kb on + strandat 3214.752 kb on + strandat 3214.941 kb on - strand, within SGL_RS16745at 3215.092 kb on + strand, within SGL_RS16745at 3215.099 kb on + strand, within SGL_RS16745at 3215.210 kb on + strand, within SGL_RS16745at 3215.264 kb on - strand, within SGL_RS16745at 3215.310 kb on - strand, within SGL_RS16745at 3215.322 kb on + strand, within SGL_RS16745at 3215.330 kb on - strand, within SGL_RS16745at 3215.614 kb on + strand, within SGL_RS16745at 3215.665 kb on + strand, within SGL_RS16745at 3215.782 kb on - strand, within SGL_RS16745at 3216.141 kb on + strand, within SGL_RS16745at 3216.579 kb on - strand, within SGL_RS16745at 3216.714 kb on + strand, within SGL_RS16745at 3216.748 kb on - strand, within SGL_RS16745at 3217.207 kb on + strand, within SGL_RS16745at 3217.333 kb on - strandat 3217.333 kb on - strandat 3217.333 kb on - strandat 3217.593 kb on + strandat 3217.641 kb on + strandat 3217.793 kb on - strandat 3217.839 kb on + strandat 3217.941 kb on - strand, within SGL_RS16750at 3217.972 kb on + strand, within SGL_RS16750at 3217.973 kb on + strand, within SGL_RS16750at 3217.989 kb on + strand, within SGL_RS16750at 3218.099 kb on + strand, within SGL_RS16750at 3218.099 kb on + strand, within SGL_RS16750at 3218.107 kb on - strand, within SGL_RS16750at 3218.134 kb on + strand, within SGL_RS16750at 3218.240 kb on - strand, within SGL_RS16750at 3218.310 kb on + strand, within SGL_RS16750at 3218.402 kb on - strand, within SGL_RS16750at 3218.467 kb on - strand, within SGL_RS16750at 3218.470 kb on - strand, within SGL_RS16750

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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3,214,157 + SGL_RS16740 0.71 -3.1
3,214,439 + -3.5
3,214,752 + -0.1
3,214,941 - SGL_RS16745 0.12 +0.1
3,215,092 + SGL_RS16745 0.17 -0.1
3,215,099 + SGL_RS16745 0.17 +0.1
3,215,210 + SGL_RS16745 0.21 -0.0
3,215,264 - SGL_RS16745 0.23 +0.5
3,215,310 - SGL_RS16745 0.25 +0.3
3,215,322 + SGL_RS16745 0.25 +0.4
3,215,330 - SGL_RS16745 0.25 +0.3
3,215,614 + SGL_RS16745 0.35 +0.4
3,215,665 + SGL_RS16745 0.36 +0.8
3,215,782 - SGL_RS16745 0.40 +0.2
3,216,141 + SGL_RS16745 0.52 -0.2
3,216,579 - SGL_RS16745 0.67 +1.8
3,216,714 + SGL_RS16745 0.72 +0.4
3,216,748 - SGL_RS16745 0.73 +0.0
3,217,207 + SGL_RS16745 0.88 +0.1
3,217,333 - -0.6
3,217,333 - -0.2
3,217,333 - -0.2
3,217,593 + -0.1
3,217,641 + +0.3
3,217,793 - -2.9
3,217,839 + +0.3
3,217,941 - SGL_RS16750 0.11 -0.1
3,217,972 + SGL_RS16750 0.15 -0.1
3,217,973 + SGL_RS16750 0.15 -0.3
3,217,989 + SGL_RS16750 0.17 +0.7
3,218,099 + SGL_RS16750 0.30 -0.0
3,218,099 + SGL_RS16750 0.30 -0.2
3,218,107 - SGL_RS16750 0.31 +0.6
3,218,134 + SGL_RS16750 0.35 +0.2
3,218,240 - SGL_RS16750 0.48 +0.3
3,218,310 + SGL_RS16750 0.57 +0.1
3,218,402 - SGL_RS16750 0.68 +0.3
3,218,467 - SGL_RS16750 0.76 -0.2
3,218,470 - SGL_RS16750 0.77 +0.6

Or see this region's nucleotide sequence