Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16405

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16400 and SGL_RS16405 are separated by 111 nucleotidesSGL_RS16405 and SGL_RS16410 are separated by 21 nucleotidesSGL_RS16410 and SGL_RS16415 are separated by 17 nucleotides SGL_RS16400: SGL_RS16400 - ATP-dependent 6-phosphofructokinase, at 3,125,045 to 3,126,199 _RS16400 SGL_RS16405: SGL_RS16405 - dihydroorotate dehydrogenase-like protein, at 3,126,311 to 3,127,342 _RS16405 SGL_RS16410: SGL_RS16410 - DUF29 domain-containing protein, at 3,127,364 to 3,127,846 _RS16410 SGL_RS16415: SGL_RS16415 - DUF29 domain-containing protein, at 3,127,864 to 3,128,313 _RS16415 Position (kb) 3126 3127 3128Strain fitness (log2 ratio) -1 0 1at 3125.317 kb on + strand, within SGL_RS16400at 3125.317 kb on + strand, within SGL_RS16400at 3125.327 kb on - strand, within SGL_RS16400at 3125.652 kb on + strand, within SGL_RS16400at 3125.701 kb on + strand, within SGL_RS16400at 3125.706 kb on + strand, within SGL_RS16400at 3125.721 kb on + strand, within SGL_RS16400at 3125.877 kb on + strand, within SGL_RS16400at 3125.882 kb on + strand, within SGL_RS16400at 3125.885 kb on - strand, within SGL_RS16400at 3125.939 kb on + strand, within SGL_RS16400at 3125.939 kb on + strand, within SGL_RS16400at 3125.947 kb on - strand, within SGL_RS16400at 3125.947 kb on - strand, within SGL_RS16400at 3126.026 kb on + strand, within SGL_RS16400at 3126.104 kb on - strandat 3126.116 kb on + strandat 3126.117 kb on + strandat 3126.117 kb on + strandat 3126.117 kb on + strandat 3126.117 kb on + strandat 3126.125 kb on - strandat 3126.330 kb on - strandat 3126.354 kb on + strandat 3126.369 kb on + strandat 3126.386 kb on - strandat 3126.431 kb on + strand, within SGL_RS16405at 3126.524 kb on + strand, within SGL_RS16405at 3126.957 kb on + strand, within SGL_RS16405at 3126.985 kb on + strand, within SGL_RS16405at 3127.159 kb on - strand, within SGL_RS16405at 3127.160 kb on - strand, within SGL_RS16405at 3127.286 kb on + strandat 3128.073 kb on + strand, within SGL_RS16415at 3128.335 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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3,125,317 + SGL_RS16400 0.24 -0.1
3,125,317 + SGL_RS16400 0.24 +1.0
3,125,327 - SGL_RS16400 0.24 +0.1
3,125,652 + SGL_RS16400 0.53 +0.4
3,125,701 + SGL_RS16400 0.57 -0.1
3,125,706 + SGL_RS16400 0.57 -0.3
3,125,721 + SGL_RS16400 0.59 +0.2
3,125,877 + SGL_RS16400 0.72 -0.0
3,125,882 + SGL_RS16400 0.72 +0.2
3,125,885 - SGL_RS16400 0.73 -0.3
3,125,939 + SGL_RS16400 0.77 +0.6
3,125,939 + SGL_RS16400 0.77 +0.1
3,125,947 - SGL_RS16400 0.78 +0.0
3,125,947 - SGL_RS16400 0.78 +0.0
3,126,026 + SGL_RS16400 0.85 +0.1
3,126,104 - -0.1
3,126,116 + +0.1
3,126,117 + +0.8
3,126,117 + +1.0
3,126,117 + +0.4
3,126,117 + +0.0
3,126,125 - -0.0
3,126,330 - +0.2
3,126,354 + +0.1
3,126,369 + -0.3
3,126,386 - +0.5
3,126,431 + SGL_RS16405 0.12 +1.4
3,126,524 + SGL_RS16405 0.21 +0.8
3,126,957 + SGL_RS16405 0.63 -0.2
3,126,985 + SGL_RS16405 0.65 -0.0
3,127,159 - SGL_RS16405 0.82 -0.4
3,127,160 - SGL_RS16405 0.82 +0.1
3,127,286 + +0.2
3,128,073 + SGL_RS16415 0.46 -0.1
3,128,335 - -0.6

Or see this region's nucleotide sequence