Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15605

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15600 and SGL_RS15605 are separated by 287 nucleotidesSGL_RS15605 and SGL_RS15610 are separated by 755 nucleotides SGL_RS15600: SGL_RS15600 - MFS transporter, at 2,948,563 to 2,949,819 _RS15600 SGL_RS15605: SGL_RS15605 - hypothetical protein, at 2,950,107 to 2,950,343 _RS15605 SGL_RS15610: SGL_RS15610 - chloride channel protein, at 2,951,099 to 2,952,454 _RS15610 Position (kb) 2950 2951Strain fitness (log2 ratio) -1 0 1at 2949.194 kb on - strand, within SGL_RS15600at 2949.231 kb on + strand, within SGL_RS15600at 2949.231 kb on + strand, within SGL_RS15600at 2949.244 kb on - strand, within SGL_RS15600at 2949.277 kb on - strand, within SGL_RS15600at 2949.300 kb on - strand, within SGL_RS15600at 2949.301 kb on - strand, within SGL_RS15600at 2949.302 kb on + strand, within SGL_RS15600at 2949.320 kb on + strand, within SGL_RS15600at 2949.326 kb on + strand, within SGL_RS15600at 2949.326 kb on + strand, within SGL_RS15600at 2949.326 kb on + strand, within SGL_RS15600at 2949.326 kb on + strand, within SGL_RS15600at 2949.328 kb on - strand, within SGL_RS15600at 2949.334 kb on - strand, within SGL_RS15600at 2949.359 kb on + strand, within SGL_RS15600at 2949.384 kb on + strand, within SGL_RS15600at 2949.463 kb on - strand, within SGL_RS15600at 2949.514 kb on + strand, within SGL_RS15600at 2949.568 kb on - strand, within SGL_RS15600at 2949.595 kb on + strand, within SGL_RS15600at 2949.646 kb on - strand, within SGL_RS15600at 2949.697 kb on + strandat 2949.710 kb on - strandat 2949.724 kb on + strandat 2949.742 kb on + strandat 2949.802 kb on + strandat 2949.808 kb on - strandat 2950.035 kb on + strandat 2950.048 kb on + strandat 2950.101 kb on + strandat 2950.162 kb on + strand, within SGL_RS15605at 2950.390 kb on - strandat 2950.390 kb on - strandat 2950.437 kb on + strandat 2950.881 kb on - strandat 2951.123 kb on + strandat 2951.142 kb on - strandat 2951.156 kb on - strandat 2951.290 kb on - strand, within SGL_RS15610at 2951.292 kb on + strand, within SGL_RS15610at 2951.307 kb on + strand, within SGL_RS15610at 2951.311 kb on + strand, within SGL_RS15610at 2951.311 kb on + strand, within SGL_RS15610at 2951.325 kb on - strand, within SGL_RS15610at 2951.325 kb on - strand, within SGL_RS15610at 2951.325 kb on - strand, within SGL_RS15610at 2951.334 kb on + strand, within SGL_RS15610

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,949,194 - SGL_RS15600 0.50 -0.2
2,949,231 + SGL_RS15600 0.53 +0.2
2,949,231 + SGL_RS15600 0.53 +0.5
2,949,244 - SGL_RS15600 0.54 -0.1
2,949,277 - SGL_RS15600 0.57 -0.5
2,949,300 - SGL_RS15600 0.59 +0.4
2,949,301 - SGL_RS15600 0.59 -0.3
2,949,302 + SGL_RS15600 0.59 +0.1
2,949,320 + SGL_RS15600 0.60 +0.2
2,949,326 + SGL_RS15600 0.61 +0.1
2,949,326 + SGL_RS15600 0.61 -0.1
2,949,326 + SGL_RS15600 0.61 -0.4
2,949,326 + SGL_RS15600 0.61 -0.0
2,949,328 - SGL_RS15600 0.61 -0.1
2,949,334 - SGL_RS15600 0.61 +0.0
2,949,359 + SGL_RS15600 0.63 +0.0
2,949,384 + SGL_RS15600 0.65 +0.0
2,949,463 - SGL_RS15600 0.72 +0.2
2,949,514 + SGL_RS15600 0.76 +0.4
2,949,568 - SGL_RS15600 0.80 -0.0
2,949,595 + SGL_RS15600 0.82 -0.1
2,949,646 - SGL_RS15600 0.86 -0.8
2,949,697 + +0.1
2,949,710 - +0.5
2,949,724 + -0.3
2,949,742 + +0.0
2,949,802 + -0.2
2,949,808 - -0.6
2,950,035 + -0.3
2,950,048 + +0.4
2,950,101 + +0.1
2,950,162 + SGL_RS15605 0.23 +0.4
2,950,390 - -0.4
2,950,390 - -0.2
2,950,437 + -0.6
2,950,881 - +0.2
2,951,123 + -0.1
2,951,142 - -0.0
2,951,156 - -0.1
2,951,290 - SGL_RS15610 0.14 +0.1
2,951,292 + SGL_RS15610 0.14 -0.1
2,951,307 + SGL_RS15610 0.15 +0.2
2,951,311 + SGL_RS15610 0.16 -0.5
2,951,311 + SGL_RS15610 0.16 -0.2
2,951,325 - SGL_RS15610 0.17 +0.3
2,951,325 - SGL_RS15610 0.17 +0.3
2,951,325 - SGL_RS15610 0.17 -0.2
2,951,334 + SGL_RS15610 0.17 -0.2

Or see this region's nucleotide sequence