Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15240

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15235 and SGL_RS15240 are separated by 229 nucleotidesSGL_RS15240 and SGL_RS15245 overlap by 4 nucleotidesSGL_RS15245 and SGL_RS15250 are separated by 255 nucleotides SGL_RS15235: SGL_RS15235 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 2,868,767 to 2,869,561 _RS15235 SGL_RS15240: SGL_RS15240 - Hpt domain-containing protein, at 2,869,791 to 2,870,699 _RS15240 SGL_RS15245: SGL_RS15245 - iron-sulfur cluster biosynthesis transcriptional regulator SufR, at 2,870,696 to 2,871,418 _RS15245 SGL_RS15250: SGL_RS15250 - Fe-S cluster assembly protein SufB, at 2,871,674 to 2,873,116 _RS15250 Position (kb) 2869 2870 2871Strain fitness (log2 ratio) -1 0 1at 2868.889 kb on + strand, within SGL_RS15235at 2868.910 kb on + strand, within SGL_RS15235at 2869.119 kb on + strand, within SGL_RS15235at 2869.158 kb on + strand, within SGL_RS15235at 2869.279 kb on + strand, within SGL_RS15235at 2869.304 kb on + strand, within SGL_RS15235at 2869.335 kb on - strand, within SGL_RS15235at 2869.348 kb on - strand, within SGL_RS15235at 2869.393 kb on + strand, within SGL_RS15235at 2869.393 kb on + strand, within SGL_RS15235at 2869.403 kb on + strand, within SGL_RS15235at 2869.437 kb on + strand, within SGL_RS15235at 2869.531 kb on - strandat 2869.537 kb on - strandat 2869.670 kb on + strandat 2869.761 kb on - strandat 2869.761 kb on - strandat 2869.857 kb on - strandat 2869.874 kb on + strandat 2869.874 kb on + strandat 2869.874 kb on + strandat 2869.881 kb on + strandat 2870.254 kb on + strand, within SGL_RS15240at 2870.297 kb on + strand, within SGL_RS15240at 2870.426 kb on - strand, within SGL_RS15240at 2870.550 kb on - strand, within SGL_RS15240at 2871.170 kb on - strand, within SGL_RS15245at 2871.254 kb on + strand, within SGL_RS15245at 2871.328 kb on + strand, within SGL_RS15245at 2871.333 kb on + strand, within SGL_RS15245at 2871.468 kb on + strandat 2871.474 kb on + strandat 2871.476 kb on - strandat 2871.476 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,868,889 + SGL_RS15235 0.15 -0.2
2,868,910 + SGL_RS15235 0.18 -0.5
2,869,119 + SGL_RS15235 0.44 -0.2
2,869,158 + SGL_RS15235 0.49 +0.0
2,869,279 + SGL_RS15235 0.64 -0.1
2,869,304 + SGL_RS15235 0.68 -0.0
2,869,335 - SGL_RS15235 0.71 +0.4
2,869,348 - SGL_RS15235 0.73 +0.3
2,869,393 + SGL_RS15235 0.79 -0.2
2,869,393 + SGL_RS15235 0.79 -0.4
2,869,403 + SGL_RS15235 0.80 -0.3
2,869,437 + SGL_RS15235 0.84 +0.0
2,869,531 - -0.1
2,869,537 - +0.7
2,869,670 + +0.2
2,869,761 - -0.9
2,869,761 - -0.2
2,869,857 - -0.4
2,869,874 + +0.1
2,869,874 + -0.0
2,869,874 + -0.0
2,869,881 + -0.1
2,870,254 + SGL_RS15240 0.51 +0.4
2,870,297 + SGL_RS15240 0.56 -0.0
2,870,426 - SGL_RS15240 0.70 +1.4
2,870,550 - SGL_RS15240 0.83 +0.1
2,871,170 - SGL_RS15245 0.66 -0.6
2,871,254 + SGL_RS15245 0.77 -0.5
2,871,328 + SGL_RS15245 0.87 -0.4
2,871,333 + SGL_RS15245 0.88 -0.9
2,871,468 + -0.2
2,871,474 + -0.5
2,871,476 - -0.7
2,871,476 - -0.0

Or see this region's nucleotide sequence