Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14755

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14750 and SGL_RS14755 are separated by 84 nucleotidesSGL_RS14755 and SGL_RS14760 are separated by 216 nucleotidesSGL_RS14760 and SGL_RS14765 are separated by 133 nucleotides SGL_RS14750: SGL_RS14750 - TldD/PmbA family protein, at 2,760,689 to 2,762,029 _RS14750 SGL_RS14755: SGL_RS14755 - tetratricopeptide repeat protein, at 2,762,114 to 2,762,953 _RS14755 SGL_RS14760: SGL_RS14760 - TetR/AcrR family transcriptional regulator, at 2,763,170 to 2,763,733 _RS14760 SGL_RS14765: SGL_RS14765 - MATE family efflux transporter, at 2,763,867 to 2,765,252 _RS14765 Position (kb) 2762 2763Strain fitness (log2 ratio) -1 0 1at 2761.164 kb on + strand, within SGL_RS14750at 2761.178 kb on + strand, within SGL_RS14750at 2761.183 kb on + strand, within SGL_RS14750at 2761.205 kb on - strand, within SGL_RS14750at 2761.210 kb on - strand, within SGL_RS14750at 2761.558 kb on - strand, within SGL_RS14750at 2761.612 kb on + strand, within SGL_RS14750at 2761.644 kb on - strand, within SGL_RS14750at 2761.699 kb on - strand, within SGL_RS14750at 2761.867 kb on + strand, within SGL_RS14750at 2761.867 kb on + strand, within SGL_RS14750at 2761.867 kb on + strand, within SGL_RS14750at 2761.877 kb on + strand, within SGL_RS14750at 2761.916 kb on + strandat 2761.986 kb on - strandat 2762.022 kb on - strandat 2762.050 kb on + strandat 2762.087 kb on - strandat 2762.087 kb on - strandat 2762.235 kb on - strand, within SGL_RS14755at 2762.267 kb on + strand, within SGL_RS14755at 2762.284 kb on - strand, within SGL_RS14755at 2762.341 kb on - strand, within SGL_RS14755at 2762.341 kb on - strand, within SGL_RS14755at 2762.343 kb on + strand, within SGL_RS14755at 2762.382 kb on + strand, within SGL_RS14755at 2762.382 kb on + strand, within SGL_RS14755at 2762.382 kb on + strand, within SGL_RS14755at 2762.382 kb on + strand, within SGL_RS14755at 2762.387 kb on + strand, within SGL_RS14755at 2762.475 kb on + strand, within SGL_RS14755at 2762.550 kb on + strand, within SGL_RS14755at 2762.728 kb on - strand, within SGL_RS14755at 2762.813 kb on + strand, within SGL_RS14755at 2762.843 kb on - strand, within SGL_RS14755at 2762.856 kb on - strand, within SGL_RS14755at 2762.985 kb on - strandat 2763.047 kb on - strandat 2763.165 kb on + strandat 2763.198 kb on + strandat 2763.257 kb on - strand, within SGL_RS14760at 2763.271 kb on - strand, within SGL_RS14760at 2763.357 kb on + strand, within SGL_RS14760at 2763.359 kb on + strand, within SGL_RS14760at 2763.376 kb on - strand, within SGL_RS14760at 2763.376 kb on - strand, within SGL_RS14760at 2763.376 kb on - strand, within SGL_RS14760at 2763.429 kb on + strand, within SGL_RS14760at 2763.436 kb on + strand, within SGL_RS14760at 2763.437 kb on - strand, within SGL_RS14760at 2763.442 kb on - strand, within SGL_RS14760at 2763.629 kb on + strand, within SGL_RS14760at 2763.637 kb on - strand, within SGL_RS14760at 2763.639 kb on + strand, within SGL_RS14760at 2763.647 kb on - strand, within SGL_RS14760at 2763.647 kb on - strand, within SGL_RS14760at 2763.653 kb on - strand, within SGL_RS14760at 2763.663 kb on + strand, within SGL_RS14760at 2763.671 kb on - strand, within SGL_RS14760at 2763.690 kb on + strandat 2763.698 kb on + strandat 2763.715 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,761,164 + SGL_RS14750 0.35 -0.4
2,761,178 + SGL_RS14750 0.36 +0.1
2,761,183 + SGL_RS14750 0.37 +0.3
2,761,205 - SGL_RS14750 0.38 +0.1
2,761,210 - SGL_RS14750 0.39 +0.1
2,761,558 - SGL_RS14750 0.65 +0.3
2,761,612 + SGL_RS14750 0.69 -0.1
2,761,644 - SGL_RS14750 0.71 +0.1
2,761,699 - SGL_RS14750 0.75 -0.1
2,761,867 + SGL_RS14750 0.88 +0.4
2,761,867 + SGL_RS14750 0.88 +0.1
2,761,867 + SGL_RS14750 0.88 +0.1
2,761,877 + SGL_RS14750 0.89 -0.3
2,761,916 + -0.1
2,761,986 - +0.0
2,762,022 - +0.4
2,762,050 + +0.1
2,762,087 - +0.6
2,762,087 - -0.9
2,762,235 - SGL_RS14755 0.14 +0.0
2,762,267 + SGL_RS14755 0.18 +0.1
2,762,284 - SGL_RS14755 0.20 -0.2
2,762,341 - SGL_RS14755 0.27 +0.9
2,762,341 - SGL_RS14755 0.27 +0.1
2,762,343 + SGL_RS14755 0.27 +0.2
2,762,382 + SGL_RS14755 0.32 +0.7
2,762,382 + SGL_RS14755 0.32 -0.3
2,762,382 + SGL_RS14755 0.32 +0.2
2,762,382 + SGL_RS14755 0.32 +1.1
2,762,387 + SGL_RS14755 0.33 +0.3
2,762,475 + SGL_RS14755 0.43 +0.1
2,762,550 + SGL_RS14755 0.52 +1.3
2,762,728 - SGL_RS14755 0.73 -0.0
2,762,813 + SGL_RS14755 0.83 -0.1
2,762,843 - SGL_RS14755 0.87 -0.3
2,762,856 - SGL_RS14755 0.88 +0.1
2,762,985 - +0.7
2,763,047 - +0.1
2,763,165 + +0.3
2,763,198 + +0.6
2,763,257 - SGL_RS14760 0.15 +0.2
2,763,271 - SGL_RS14760 0.18 -0.0
2,763,357 + SGL_RS14760 0.33 +0.2
2,763,359 + SGL_RS14760 0.34 -0.2
2,763,376 - SGL_RS14760 0.37 -0.0
2,763,376 - SGL_RS14760 0.37 +0.2
2,763,376 - SGL_RS14760 0.37 +0.2
2,763,429 + SGL_RS14760 0.46 -0.3
2,763,436 + SGL_RS14760 0.47 +0.5
2,763,437 - SGL_RS14760 0.47 +0.3
2,763,442 - SGL_RS14760 0.48 -0.1
2,763,629 + SGL_RS14760 0.81 +0.2
2,763,637 - SGL_RS14760 0.83 +0.1
2,763,639 + SGL_RS14760 0.83 +0.2
2,763,647 - SGL_RS14760 0.85 +0.1
2,763,647 - SGL_RS14760 0.85 -0.1
2,763,653 - SGL_RS14760 0.86 +0.0
2,763,663 + SGL_RS14760 0.87 -0.5
2,763,671 - SGL_RS14760 0.89 +0.1
2,763,690 + +0.1
2,763,698 + -0.1
2,763,715 + -0.2

Or see this region's nucleotide sequence