Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14455

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS19635 and SGL_RS14450 are separated by 349 nucleotidesSGL_RS14450 and SGL_RS14455 are separated by 145 nucleotidesSGL_RS14455 and SGL_RS14460 are separated by 314 nucleotides SGL_RS19635: SGL_RS19635 - hypothetical protein, at 2,695,620 to 2,695,775 _RS19635 SGL_RS14450: SGL_RS14450 - hypothetical protein, at 2,696,125 to 2,696,403 _RS14450 SGL_RS14455: SGL_RS14455 - hypothetical protein, at 2,696,549 to 2,696,836 _RS14455 SGL_RS14460: SGL_RS14460 - glycosyltransferase family 1 protein, at 2,697,151 to 2,698,248 _RS14460 Position (kb) 2696 2697Strain fitness (log2 ratio) -2 -1 0 1at 2695.704 kb on - strand, within SGL_RS19635at 2696.049 kb on + strandat 2696.091 kb on - strandat 2696.671 kb on + strand, within SGL_RS14455at 2696.675 kb on + strand, within SGL_RS14455at 2696.699 kb on + strand, within SGL_RS14455at 2696.929 kb on + strandat 2696.929 kb on + strandat 2697.496 kb on + strand, within SGL_RS14460at 2697.564 kb on + strand, within SGL_RS14460

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
2,695,704 - SGL_RS19635 0.54 +0.1
2,696,049 + +0.3
2,696,091 - +0.2
2,696,671 + SGL_RS14455 0.42 +0.1
2,696,675 + SGL_RS14455 0.44 -0.0
2,696,699 + SGL_RS14455 0.52 +0.9
2,696,929 + -0.2
2,696,929 + -0.3
2,697,496 + SGL_RS14460 0.31 -2.1
2,697,564 + SGL_RS14460 0.38 -1.3

Or see this region's nucleotide sequence