Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14375

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14365 and SGL_RS14370 are separated by 145 nucleotidesSGL_RS14370 and SGL_RS14375 are separated by 60 nucleotidesSGL_RS14375 and SGL_RS14380 are separated by 21 nucleotidesSGL_RS14380 and SGL_RS14385 are separated by 4 nucleotides SGL_RS14365: SGL_RS14365 - methionine--tRNA ligase, at 2,678,140 to 2,679,738 _RS14365 SGL_RS14370: SGL_RS14370 - NYN domain-containing protein, at 2,679,884 to 2,680,489 _RS14370 SGL_RS14375: SGL_RS14375 - deoxyguanosinetriphosphate triphosphohydrolase, at 2,680,550 to 2,681,872 _RS14375 SGL_RS14380: SGL_RS14380 - DUF1361 domain-containing protein, at 2,681,894 to 2,682,547 _RS14380 SGL_RS14385: SGL_RS14385 - response regulator transcription factor, at 2,682,552 to 2,683,226 _RS14385 Position (kb) 2680 2681 2682Strain fitness (log2 ratio) -1 0 1at 2680.033 kb on - strand, within SGL_RS14370at 2680.043 kb on - strand, within SGL_RS14370at 2680.189 kb on + strand, within SGL_RS14370at 2680.256 kb on + strand, within SGL_RS14370at 2680.941 kb on + strand, within SGL_RS14375at 2681.033 kb on + strand, within SGL_RS14375at 2681.056 kb on + strand, within SGL_RS14375at 2681.350 kb on - strand, within SGL_RS14375at 2681.358 kb on - strand, within SGL_RS14375at 2681.382 kb on - strand, within SGL_RS14375at 2681.399 kb on + strand, within SGL_RS14375at 2681.523 kb on - strand, within SGL_RS14375at 2681.551 kb on + strand, within SGL_RS14375at 2681.644 kb on + strand, within SGL_RS14375at 2681.671 kb on + strand, within SGL_RS14375at 2681.679 kb on - strand, within SGL_RS14375at 2681.679 kb on - strand, within SGL_RS14375at 2681.709 kb on + strand, within SGL_RS14375at 2681.741 kb on - strandat 2681.816 kb on - strandat 2681.827 kb on + strandat 2681.998 kb on - strand, within SGL_RS14380at 2682.012 kb on - strand, within SGL_RS14380at 2682.025 kb on + strand, within SGL_RS14380at 2682.134 kb on + strand, within SGL_RS14380at 2682.216 kb on - strand, within SGL_RS14380at 2682.388 kb on - strand, within SGL_RS14380at 2682.509 kb on - strandat 2682.584 kb on - strandat 2682.594 kb on - strandat 2682.645 kb on - strand, within SGL_RS14385at 2682.690 kb on - strand, within SGL_RS14385at 2682.690 kb on - strand, within SGL_RS14385at 2682.711 kb on + strand, within SGL_RS14385

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,680,033 - SGL_RS14370 0.25 +0.0
2,680,043 - SGL_RS14370 0.26 -0.4
2,680,189 + SGL_RS14370 0.50 -0.4
2,680,256 + SGL_RS14370 0.61 -0.2
2,680,941 + SGL_RS14375 0.30 +0.2
2,681,033 + SGL_RS14375 0.37 +0.3
2,681,056 + SGL_RS14375 0.38 +0.1
2,681,350 - SGL_RS14375 0.60 +0.1
2,681,358 - SGL_RS14375 0.61 +0.4
2,681,382 - SGL_RS14375 0.63 +0.2
2,681,399 + SGL_RS14375 0.64 +0.3
2,681,523 - SGL_RS14375 0.74 +0.3
2,681,551 + SGL_RS14375 0.76 +0.2
2,681,644 + SGL_RS14375 0.83 +0.1
2,681,671 + SGL_RS14375 0.85 +0.3
2,681,679 - SGL_RS14375 0.85 -0.0
2,681,679 - SGL_RS14375 0.85 +0.9
2,681,709 + SGL_RS14375 0.88 +0.5
2,681,741 - +0.1
2,681,816 - +0.1
2,681,827 + +1.5
2,681,998 - SGL_RS14380 0.16 +0.6
2,682,012 - SGL_RS14380 0.18 +0.4
2,682,025 + SGL_RS14380 0.20 +0.3
2,682,134 + SGL_RS14380 0.37 +0.3
2,682,216 - SGL_RS14380 0.49 +0.1
2,682,388 - SGL_RS14380 0.76 +0.1
2,682,509 - +0.7
2,682,584 - -0.2
2,682,594 - +0.1
2,682,645 - SGL_RS14385 0.14 -0.3
2,682,690 - SGL_RS14385 0.20 +0.4
2,682,690 - SGL_RS14385 0.20 -0.1
2,682,711 + SGL_RS14385 0.24 -0.4

Or see this region's nucleotide sequence