Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14230

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14225 and SGL_RS14230 are separated by 226 nucleotidesSGL_RS14230 and SGL_RS14235 are separated by 100 nucleotidesSGL_RS14235 and SGL_RS14240 are separated by 103 nucleotides SGL_RS14225: SGL_RS14225 - PspA/IM30 family protein, at 2,645,271 to 2,646,074 _RS14225 SGL_RS14230: SGL_RS14230 - hypothetical protein, at 2,646,301 to 2,646,522 _RS14230 SGL_RS14235: SGL_RS14235 - MBL fold metallo-hydrolase, at 2,646,623 to 2,647,282 _RS14235 SGL_RS14240: SGL_RS14240 - preprotein translocase subunit SecA, at 2,647,386 to 2,650,184 _RS14240 Position (kb) 2646 2647Strain fitness (log2 ratio) -1 0 1at 2645.419 kb on - strand, within SGL_RS14225at 2646.186 kb on - strandat 2646.187 kb on - strandat 2646.211 kb on - strandat 2646.211 kb on - strandat 2646.238 kb on + strandat 2646.329 kb on + strand, within SGL_RS14230at 2646.376 kb on + strand, within SGL_RS14230at 2646.534 kb on - strandat 2646.685 kb on + strandat 2646.689 kb on + strand, within SGL_RS14235at 2646.694 kb on + strand, within SGL_RS14235at 2646.698 kb on - strand, within SGL_RS14235at 2646.730 kb on - strand, within SGL_RS14235at 2646.764 kb on - strand, within SGL_RS14235at 2646.910 kb on - strand, within SGL_RS14235at 2646.919 kb on + strand, within SGL_RS14235at 2646.975 kb on - strand, within SGL_RS14235at 2646.979 kb on + strand, within SGL_RS14235at 2647.187 kb on + strand, within SGL_RS14235at 2647.372 kb on + strandat 2647.401 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,645,419 - SGL_RS14225 0.18 -0.8
2,646,186 - -0.4
2,646,187 - -0.2
2,646,211 - +0.8
2,646,211 - -0.2
2,646,238 + +0.4
2,646,329 + SGL_RS14230 0.13 +0.2
2,646,376 + SGL_RS14230 0.34 +0.4
2,646,534 - +0.0
2,646,685 + -0.1
2,646,689 + SGL_RS14235 0.10 -0.1
2,646,694 + SGL_RS14235 0.11 -0.1
2,646,698 - SGL_RS14235 0.11 -0.0
2,646,730 - SGL_RS14235 0.16 +0.0
2,646,764 - SGL_RS14235 0.21 -0.1
2,646,910 - SGL_RS14235 0.43 +0.1
2,646,919 + SGL_RS14235 0.45 +0.2
2,646,975 - SGL_RS14235 0.53 +0.7
2,646,979 + SGL_RS14235 0.54 +0.1
2,647,187 + SGL_RS14235 0.85 +0.4
2,647,372 + -0.0
2,647,401 - +0.4

Or see this region's nucleotide sequence