Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14225 and SGL_RS14230 are separated by 226 nucleotides SGL_RS14230 and SGL_RS14235 are separated by 100 nucleotides SGL_RS14235 and SGL_RS14240 are separated by 103 nucleotides
SGL_RS14225: SGL_RS14225 - PspA/IM30 family protein, at 2,645,271 to 2,646,074
_RS14225
SGL_RS14230: SGL_RS14230 - hypothetical protein, at 2,646,301 to 2,646,522
_RS14230
SGL_RS14235: SGL_RS14235 - MBL fold metallo-hydrolase, at 2,646,623 to 2,647,282
_RS14235
SGL_RS14240: SGL_RS14240 - preprotein translocase subunit SecA, at 2,647,386 to 2,650,184
_RS14240
Position (kb)
2646
2647 Strain fitness (log2 ratio)
-1
0
1 at 2645.419 kb on - strand, within SGL_RS14225 at 2646.186 kb on - strand at 2646.187 kb on - strand at 2646.211 kb on - strand at 2646.211 kb on - strand at 2646.238 kb on + strand at 2646.329 kb on + strand, within SGL_RS14230 at 2646.376 kb on + strand, within SGL_RS14230 at 2646.534 kb on - strand at 2646.685 kb on + strand at 2646.689 kb on + strand, within SGL_RS14235 at 2646.694 kb on + strand, within SGL_RS14235 at 2646.698 kb on - strand, within SGL_RS14235 at 2646.730 kb on - strand, within SGL_RS14235 at 2646.764 kb on - strand, within SGL_RS14235 at 2646.910 kb on - strand, within SGL_RS14235 at 2646.919 kb on + strand, within SGL_RS14235 at 2646.975 kb on - strand, within SGL_RS14235 at 2646.979 kb on + strand, within SGL_RS14235 at 2647.187 kb on + strand, within SGL_RS14235 at 2647.372 kb on + strand at 2647.401 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 2,645,419 - SGL_RS14225 0.18 -0.8 2,646,186 - -0.4 2,646,187 - -0.2 2,646,211 - +0.8 2,646,211 - -0.2 2,646,238 + +0.4 2,646,329 + SGL_RS14230 0.13 +0.2 2,646,376 + SGL_RS14230 0.34 +0.4 2,646,534 - +0.0 2,646,685 + -0.1 2,646,689 + SGL_RS14235 0.10 -0.1 2,646,694 + SGL_RS14235 0.11 -0.1 2,646,698 - SGL_RS14235 0.11 -0.0 2,646,730 - SGL_RS14235 0.16 +0.0 2,646,764 - SGL_RS14235 0.21 -0.1 2,646,910 - SGL_RS14235 0.43 +0.1 2,646,919 + SGL_RS14235 0.45 +0.2 2,646,975 - SGL_RS14235 0.53 +0.7 2,646,979 + SGL_RS14235 0.54 +0.1 2,647,187 + SGL_RS14235 0.85 +0.4 2,647,372 + -0.0 2,647,401 - +0.4
Or see this region's nucleotide sequence