Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13685 and SGL_RS13690 overlap by 22 nucleotides SGL_RS13690 and SGL_RS13695 are separated by 279 nucleotides
SGL_RS13685: SGL_RS13685 - ABC transporter ATP-binding protein, at 2,540,821 to 2,541,885
_RS13685
SGL_RS13690: SGL_RS13690 - pentapeptide repeat-containing protein, at 2,541,864 to 2,542,724
_RS13690
SGL_RS13695: SGL_RS13695 - SIMPL domain-containing protein, at 2,543,004 to 2,543,687
_RS13695
Position (kb)
2541
2542
2543 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2540.958 kb on + strand, within SGL_RS13685 at 2540.966 kb on - strand, within SGL_RS13685 at 2540.988 kb on + strand, within SGL_RS13685 at 2541.181 kb on + strand, within SGL_RS13685 at 2541.225 kb on + strand, within SGL_RS13685 at 2541.321 kb on - strand, within SGL_RS13685 at 2541.386 kb on - strand, within SGL_RS13685 at 2541.510 kb on + strand, within SGL_RS13685 at 2541.521 kb on - strand, within SGL_RS13685 at 2541.541 kb on + strand, within SGL_RS13685 at 2541.641 kb on - strand, within SGL_RS13685 at 2541.746 kb on + strand, within SGL_RS13685 at 2541.941 kb on - strand at 2541.992 kb on + strand, within SGL_RS13690 at 2542.166 kb on - strand, within SGL_RS13690 at 2542.642 kb on - strand at 2542.701 kb on - strand at 2542.704 kb on + strand at 2542.741 kb on + strand at 2542.785 kb on + strand at 2542.791 kb on - strand at 2542.793 kb on - strand at 2542.793 kb on - strand at 2542.966 kb on + strand at 2543.041 kb on + strand at 2543.048 kb on + strand at 2543.056 kb on - strand at 2543.116 kb on + strand, within SGL_RS13695 at 2543.116 kb on + strand, within SGL_RS13695 at 2543.219 kb on - strand, within SGL_RS13695 at 2543.253 kb on + strand, within SGL_RS13695 at 2543.381 kb on + strand, within SGL_RS13695 at 2543.384 kb on - strand, within SGL_RS13695 at 2543.393 kb on - strand, within SGL_RS13695 at 2543.562 kb on + strand, within SGL_RS13695 at 2543.597 kb on - strand, within SGL_RS13695 at 2543.598 kb on + strand, within SGL_RS13695 at 2543.652 kb on + strand at 2543.722 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 2,540,958 + SGL_RS13685 0.13 -1.4 2,540,966 - SGL_RS13685 0.14 -2.9 2,540,988 + SGL_RS13685 0.16 -2.8 2,541,181 + SGL_RS13685 0.34 -3.3 2,541,225 + SGL_RS13685 0.38 -0.8 2,541,321 - SGL_RS13685 0.47 -1.4 2,541,386 - SGL_RS13685 0.53 -1.5 2,541,510 + SGL_RS13685 0.65 -2.0 2,541,521 - SGL_RS13685 0.66 -2.3 2,541,541 + SGL_RS13685 0.68 -1.7 2,541,641 - SGL_RS13685 0.77 -2.2 2,541,746 + SGL_RS13685 0.87 -1.5 2,541,941 - -0.2 2,541,992 + SGL_RS13690 0.15 +1.6 2,542,166 - SGL_RS13690 0.35 +0.7 2,542,642 - +0.2 2,542,701 - +0.2 2,542,704 + +0.1 2,542,741 + -0.4 2,542,785 + -0.4 2,542,791 - -1.1 2,542,793 - -0.1 2,542,793 - -0.1 2,542,966 + +0.5 2,543,041 + -0.0 2,543,048 + +0.1 2,543,056 - +0.1 2,543,116 + SGL_RS13695 0.16 +0.1 2,543,116 + SGL_RS13695 0.16 +0.1 2,543,219 - SGL_RS13695 0.31 -1.3 2,543,253 + SGL_RS13695 0.36 +0.4 2,543,381 + SGL_RS13695 0.55 -0.2 2,543,384 - SGL_RS13695 0.56 -1.1 2,543,393 - SGL_RS13695 0.57 +0.2 2,543,562 + SGL_RS13695 0.82 +0.0 2,543,597 - SGL_RS13695 0.87 -0.1 2,543,598 + SGL_RS13695 0.87 +0.3 2,543,652 + +0.4 2,543,722 + -0.3
Or see this region's nucleotide sequence