Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13690

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13685 and SGL_RS13690 overlap by 22 nucleotidesSGL_RS13690 and SGL_RS13695 are separated by 279 nucleotides SGL_RS13685: SGL_RS13685 - ABC transporter ATP-binding protein, at 2,540,821 to 2,541,885 _RS13685 SGL_RS13690: SGL_RS13690 - pentapeptide repeat-containing protein, at 2,541,864 to 2,542,724 _RS13690 SGL_RS13695: SGL_RS13695 - SIMPL domain-containing protein, at 2,543,004 to 2,543,687 _RS13695 Position (kb) 2541 2542 2543Strain fitness (log2 ratio) -3 -2 -1 0 1at 2540.958 kb on + strand, within SGL_RS13685at 2540.966 kb on - strand, within SGL_RS13685at 2540.988 kb on + strand, within SGL_RS13685at 2541.181 kb on + strand, within SGL_RS13685at 2541.225 kb on + strand, within SGL_RS13685at 2541.321 kb on - strand, within SGL_RS13685at 2541.386 kb on - strand, within SGL_RS13685at 2541.510 kb on + strand, within SGL_RS13685at 2541.521 kb on - strand, within SGL_RS13685at 2541.541 kb on + strand, within SGL_RS13685at 2541.641 kb on - strand, within SGL_RS13685at 2541.746 kb on + strand, within SGL_RS13685at 2541.941 kb on - strandat 2541.992 kb on + strand, within SGL_RS13690at 2542.166 kb on - strand, within SGL_RS13690at 2542.642 kb on - strandat 2542.701 kb on - strandat 2542.704 kb on + strandat 2542.741 kb on + strandat 2542.785 kb on + strandat 2542.791 kb on - strandat 2542.793 kb on - strandat 2542.793 kb on - strandat 2542.966 kb on + strandat 2543.041 kb on + strandat 2543.048 kb on + strandat 2543.056 kb on - strandat 2543.116 kb on + strand, within SGL_RS13695at 2543.116 kb on + strand, within SGL_RS13695at 2543.219 kb on - strand, within SGL_RS13695at 2543.253 kb on + strand, within SGL_RS13695at 2543.381 kb on + strand, within SGL_RS13695at 2543.384 kb on - strand, within SGL_RS13695at 2543.393 kb on - strand, within SGL_RS13695at 2543.562 kb on + strand, within SGL_RS13695at 2543.597 kb on - strand, within SGL_RS13695at 2543.598 kb on + strand, within SGL_RS13695at 2543.652 kb on + strandat 2543.722 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,540,958 + SGL_RS13685 0.13 -1.4
2,540,966 - SGL_RS13685 0.14 -2.9
2,540,988 + SGL_RS13685 0.16 -2.8
2,541,181 + SGL_RS13685 0.34 -3.3
2,541,225 + SGL_RS13685 0.38 -0.8
2,541,321 - SGL_RS13685 0.47 -1.4
2,541,386 - SGL_RS13685 0.53 -1.5
2,541,510 + SGL_RS13685 0.65 -2.0
2,541,521 - SGL_RS13685 0.66 -2.3
2,541,541 + SGL_RS13685 0.68 -1.7
2,541,641 - SGL_RS13685 0.77 -2.2
2,541,746 + SGL_RS13685 0.87 -1.5
2,541,941 - -0.2
2,541,992 + SGL_RS13690 0.15 +1.6
2,542,166 - SGL_RS13690 0.35 +0.7
2,542,642 - +0.2
2,542,701 - +0.2
2,542,704 + +0.1
2,542,741 + -0.4
2,542,785 + -0.4
2,542,791 - -1.1
2,542,793 - -0.1
2,542,793 - -0.1
2,542,966 + +0.5
2,543,041 + -0.0
2,543,048 + +0.1
2,543,056 - +0.1
2,543,116 + SGL_RS13695 0.16 +0.1
2,543,116 + SGL_RS13695 0.16 +0.1
2,543,219 - SGL_RS13695 0.31 -1.3
2,543,253 + SGL_RS13695 0.36 +0.4
2,543,381 + SGL_RS13695 0.55 -0.2
2,543,384 - SGL_RS13695 0.56 -1.1
2,543,393 - SGL_RS13695 0.57 +0.2
2,543,562 + SGL_RS13695 0.82 +0.0
2,543,597 - SGL_RS13695 0.87 -0.1
2,543,598 + SGL_RS13695 0.87 +0.3
2,543,652 + +0.4
2,543,722 + -0.3

Or see this region's nucleotide sequence