Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13400

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13395 and SGL_RS13400 are separated by 398 nucleotidesSGL_RS13400 and SGL_RS13405 are separated by 171 nucleotides SGL_RS13395: SGL_RS13395 - murein transglycosylase A, at 2,473,645 to 2,474,796 _RS13395 SGL_RS13400: SGL_RS13400 - L-threonylcarbamoyladenylate synthase, at 2,475,195 to 2,475,848 _RS13400 SGL_RS13405: SGL_RS13405 - nucleotidyltransferase family protein, at 2,476,020 to 2,476,781 _RS13405 Position (kb) 2475 2476Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2474.267 kb on + strand, within SGL_RS13395at 2474.323 kb on - strand, within SGL_RS13395at 2474.595 kb on + strand, within SGL_RS13395at 2474.603 kb on - strand, within SGL_RS13395at 2474.651 kb on + strand, within SGL_RS13395at 2474.734 kb on - strandat 2474.881 kb on + strandat 2475.372 kb on - strand, within SGL_RS13400at 2475.384 kb on + strand, within SGL_RS13400at 2475.523 kb on + strand, within SGL_RS13400at 2475.626 kb on + strand, within SGL_RS13400at 2475.631 kb on + strand, within SGL_RS13400at 2476.022 kb on + strandat 2476.167 kb on - strand, within SGL_RS13405at 2476.257 kb on + strand, within SGL_RS13405at 2476.544 kb on + strand, within SGL_RS13405

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,474,267 + SGL_RS13395 0.54 -0.1
2,474,323 - SGL_RS13395 0.59 +0.1
2,474,595 + SGL_RS13395 0.82 -0.5
2,474,603 - SGL_RS13395 0.83 +0.1
2,474,651 + SGL_RS13395 0.87 -0.6
2,474,734 - +0.4
2,474,881 + -0.0
2,475,372 - SGL_RS13400 0.27 +0.4
2,475,384 + SGL_RS13400 0.29 -0.0
2,475,523 + SGL_RS13400 0.50 +0.3
2,475,626 + SGL_RS13400 0.66 +0.1
2,475,631 + SGL_RS13400 0.67 +0.8
2,476,022 + +0.3
2,476,167 - SGL_RS13405 0.19 -3.9
2,476,257 + SGL_RS13405 0.31 -3.3
2,476,544 + SGL_RS13405 0.69 -2.0

Or see this region's nucleotide sequence