Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12760

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12755 and SGL_RS12760 are separated by 187 nucleotidesSGL_RS12760 and SGL_RS12765 are separated by 88 nucleotidesSGL_RS12765 and SGL_RS12770 overlap by 20 nucleotides SGL_RS12755: SGL_RS12755 - IMS domain-containing protein, at 2,314,780 to 2,316,924 _RS12755 SGL_RS12760: SGL_RS12760 - hypothetical protein, at 2,317,112 to 2,317,447 _RS12760 SGL_RS12765: SGL_RS12765 - hypothetical protein, at 2,317,536 to 2,318,030 _RS12765 SGL_RS12770: SGL_RS12770 - uroporphyrinogen-III C-methyltransferase, at 2,318,011 to 2,319,627 _RS12770 Position (kb) 2317 2318Strain fitness (log2 ratio) -3 -2 -1 0 1at 2316.275 kb on - strand, within SGL_RS12755at 2316.285 kb on + strand, within SGL_RS12755at 2316.287 kb on + strand, within SGL_RS12755at 2316.411 kb on - strand, within SGL_RS12755at 2316.432 kb on - strand, within SGL_RS12755at 2316.468 kb on + strand, within SGL_RS12755at 2316.676 kb on + strand, within SGL_RS12755at 2316.676 kb on + strand, within SGL_RS12755at 2316.684 kb on - strand, within SGL_RS12755at 2316.684 kb on - strand, within SGL_RS12755at 2316.684 kb on - strand, within SGL_RS12755at 2316.694 kb on + strand, within SGL_RS12755at 2316.696 kb on - strand, within SGL_RS12755at 2316.708 kb on - strand, within SGL_RS12755at 2316.724 kb on + strandat 2316.853 kb on - strandat 2316.867 kb on + strandat 2316.879 kb on + strandat 2316.933 kb on + strandat 2316.981 kb on + strandat 2316.981 kb on + strandat 2316.989 kb on - strandat 2317.032 kb on - strandat 2317.162 kb on - strand, within SGL_RS12760at 2317.270 kb on - strand, within SGL_RS12760at 2317.279 kb on + strand, within SGL_RS12760at 2317.280 kb on - strand, within SGL_RS12760at 2317.579 kb on - strandat 2317.609 kb on + strand, within SGL_RS12765at 2317.628 kb on - strand, within SGL_RS12765at 2317.724 kb on + strand, within SGL_RS12765at 2317.769 kb on - strand, within SGL_RS12765at 2317.824 kb on - strand, within SGL_RS12765at 2317.833 kb on + strand, within SGL_RS12765at 2317.833 kb on + strand, within SGL_RS12765at 2317.936 kb on - strand, within SGL_RS12765

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,316,275 - SGL_RS12755 0.70 -0.9
2,316,285 + SGL_RS12755 0.70 -1.2
2,316,287 + SGL_RS12755 0.70 -1.2
2,316,411 - SGL_RS12755 0.76 -1.1
2,316,432 - SGL_RS12755 0.77 -2.6
2,316,468 + SGL_RS12755 0.79 -0.9
2,316,676 + SGL_RS12755 0.88 -0.6
2,316,676 + SGL_RS12755 0.88 -3.2
2,316,684 - SGL_RS12755 0.89 -1.2
2,316,684 - SGL_RS12755 0.89 -0.8
2,316,684 - SGL_RS12755 0.89 -0.8
2,316,694 + SGL_RS12755 0.89 -1.4
2,316,696 - SGL_RS12755 0.89 -1.4
2,316,708 - SGL_RS12755 0.90 -0.8
2,316,724 + -0.8
2,316,853 - +0.0
2,316,867 + -0.6
2,316,879 + -1.1
2,316,933 + -0.4
2,316,981 + -0.6
2,316,981 + -0.3
2,316,989 - -0.2
2,317,032 - -0.0
2,317,162 - SGL_RS12760 0.15 +0.6
2,317,270 - SGL_RS12760 0.47 +0.6
2,317,279 + SGL_RS12760 0.50 -0.1
2,317,280 - SGL_RS12760 0.50 -0.0
2,317,579 - +0.3
2,317,609 + SGL_RS12765 0.15 +0.0
2,317,628 - SGL_RS12765 0.19 +0.3
2,317,724 + SGL_RS12765 0.38 +0.1
2,317,769 - SGL_RS12765 0.47 -0.1
2,317,824 - SGL_RS12765 0.58 +0.2
2,317,833 + SGL_RS12765 0.60 -0.1
2,317,833 + SGL_RS12765 0.60 -0.0
2,317,936 - SGL_RS12765 0.81 +0.2

Or see this region's nucleotide sequence