Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12535

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12525 and SGL_RS12530 are separated by 203 nucleotidesSGL_RS12530 and SGL_RS12535 are separated by 145 nucleotidesSGL_RS12535 and SGL_RS12540 are separated by 40 nucleotides SGL_RS12525: SGL_RS12525 - glycogen synthase GlgA, at 2,265,213 to 2,266,646 _RS12525 SGL_RS12530: SGL_RS12530 - DUF1830 domain-containing protein, at 2,266,850 to 2,267,344 _RS12530 SGL_RS12535: SGL_RS12535 - radical SAM protein, at 2,267,490 to 2,269,085 _RS12535 SGL_RS12540: SGL_RS12540 - RNA polymerase sigma factor, RpoD/SigA family, at 2,269,126 to 2,270,163 _RS12540 Position (kb) 2267 2268 2269 2270Strain fitness (log2 ratio) -1 0 1at 2266.521 kb on + strandat 2266.540 kb on + strandat 2266.594 kb on + strandat 2266.792 kb on + strandat 2266.800 kb on - strandat 2266.897 kb on + strandat 2266.941 kb on + strand, within SGL_RS12530at 2267.036 kb on + strand, within SGL_RS12530at 2267.054 kb on + strand, within SGL_RS12530at 2267.467 kb on + strandat 2267.469 kb on + strandat 2267.489 kb on - strandat 2267.892 kb on - strand, within SGL_RS12535at 2267.987 kb on + strand, within SGL_RS12535at 2268.038 kb on - strand, within SGL_RS12535at 2268.091 kb on - strand, within SGL_RS12535at 2268.172 kb on + strand, within SGL_RS12535at 2268.277 kb on + strand, within SGL_RS12535at 2268.299 kb on + strand, within SGL_RS12535at 2268.448 kb on - strand, within SGL_RS12535at 2268.450 kb on + strand, within SGL_RS12535at 2268.458 kb on - strand, within SGL_RS12535at 2268.458 kb on - strand, within SGL_RS12535at 2268.619 kb on + strand, within SGL_RS12535at 2268.852 kb on - strand, within SGL_RS12535at 2268.917 kb on + strand, within SGL_RS12535at 2268.998 kb on + strandat 2269.016 kb on - strandat 2269.016 kb on - strandat 2269.445 kb on - strand, within SGL_RS12540at 2269.513 kb on - strand, within SGL_RS12540at 2269.616 kb on + strand, within SGL_RS12540at 2269.621 kb on + strand, within SGL_RS12540at 2269.750 kb on - strand, within SGL_RS12540at 2269.859 kb on - strand, within SGL_RS12540at 2270.051 kb on - strand, within SGL_RS12540

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,266,521 + +0.8
2,266,540 + -0.3
2,266,594 + -0.3
2,266,792 + +0.2
2,266,800 - +0.1
2,266,897 + -0.5
2,266,941 + SGL_RS12530 0.18 +0.1
2,267,036 + SGL_RS12530 0.38 +0.3
2,267,054 + SGL_RS12530 0.41 -0.2
2,267,467 + -0.2
2,267,469 + -0.1
2,267,489 - +0.1
2,267,892 - SGL_RS12535 0.25 +0.5
2,267,987 + SGL_RS12535 0.31 +0.9
2,268,038 - SGL_RS12535 0.34 +0.0
2,268,091 - SGL_RS12535 0.38 +0.7
2,268,172 + SGL_RS12535 0.43 +0.4
2,268,277 + SGL_RS12535 0.49 -0.3
2,268,299 + SGL_RS12535 0.51 -0.3
2,268,448 - SGL_RS12535 0.60 -0.1
2,268,450 + SGL_RS12535 0.60 +1.0
2,268,458 - SGL_RS12535 0.61 +1.0
2,268,458 - SGL_RS12535 0.61 -0.3
2,268,619 + SGL_RS12535 0.71 -0.0
2,268,852 - SGL_RS12535 0.85 +0.7
2,268,917 + SGL_RS12535 0.89 +1.5
2,268,998 + -0.8
2,269,016 - -0.5
2,269,016 - +0.9
2,269,445 - SGL_RS12540 0.31 -0.5
2,269,513 - SGL_RS12540 0.37 -0.7
2,269,616 + SGL_RS12540 0.47 -0.6
2,269,621 + SGL_RS12540 0.48 -1.5
2,269,750 - SGL_RS12540 0.60 -1.5
2,269,859 - SGL_RS12540 0.71 -0.6
2,270,051 - SGL_RS12540 0.89 -0.3

Or see this region's nucleotide sequence