Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11700

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11695 and SGL_RS11700 are separated by 143 nucleotidesSGL_RS11700 and SGL_RS11705 are separated by 226 nucleotidesSGL_RS11705 and SGL_RS18930 are separated by 111 nucleotides SGL_RS11695: SGL_RS11695 - hypothetical protein, at 2,080,885 to 2,082,720 _RS11695 SGL_RS11700: SGL_RS11700 - 2OG-Fe(II) oxygenase, at 2,082,864 to 2,083,916 _RS11700 SGL_RS11705: SGL_RS11705 - DUF2281 domain-containing protein, at 2,084,143 to 2,084,370 _RS11705 SGL_RS18930: SGL_RS18930 - PIN domain-containing protein, at 2,084,482 to 2,084,760 _RS18930 Position (kb) 2082 2083 2084Strain fitness (log2 ratio) -1 0 1at 2081.997 kb on + strand, within SGL_RS11695at 2082.509 kb on + strand, within SGL_RS11695at 2082.533 kb on + strand, within SGL_RS11695at 2082.535 kb on - strand, within SGL_RS11695at 2082.545 kb on + strandat 2082.613 kb on - strandat 2083.075 kb on + strand, within SGL_RS11700at 2083.477 kb on + strand, within SGL_RS11700at 2083.934 kb on + strandat 2084.038 kb on + strandat 2084.070 kb on + strandat 2084.073 kb on - strandat 2084.719 kb on + strand, within SGL_RS18930

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,081,997 + SGL_RS11695 0.61 -0.0
2,082,509 + SGL_RS11695 0.88 +0.1
2,082,533 + SGL_RS11695 0.90 +0.3
2,082,535 - SGL_RS11695 0.90 -0.2
2,082,545 + +0.1
2,082,613 - -0.2
2,083,075 + SGL_RS11700 0.20 +0.3
2,083,477 + SGL_RS11700 0.58 +0.3
2,083,934 + -0.1
2,084,038 + +0.1
2,084,070 + +0.0
2,084,073 - -0.2
2,084,719 + SGL_RS18930 0.85 +0.2

Or see this region's nucleotide sequence