Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11645

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11640 and SGL_RS11645 are separated by 83 nucleotidesSGL_RS11645 and SGL_RS11650 overlap by 4 nucleotidesSGL_RS11650 and SGL_RS11655 are separated by 33 nucleotides SGL_RS11640: SGL_RS11640 - tetratricopeptide repeat protein, at 2,070,019 to 2,070,891 _RS11640 SGL_RS11645: SGL_RS11645 - photosystem II protein Psb27, at 2,070,975 to 2,071,382 _RS11645 SGL_RS11650: SGL_RS11650 - ribonuclease III, at 2,071,379 to 2,072,074 _RS11650 SGL_RS11655: SGL_RS11655 - iron export ABC transporter permease subunit FetB, at 2,072,108 to 2,072,887 _RS11655 Position (kb) 2070 2071 2072Strain fitness (log2 ratio) -1 0 1at 2070.077 kb on - strandat 2070.096 kb on - strandat 2070.169 kb on + strand, within SGL_RS11640at 2070.170 kb on - strand, within SGL_RS11640at 2070.312 kb on + strand, within SGL_RS11640at 2070.312 kb on + strand, within SGL_RS11640at 2070.328 kb on + strand, within SGL_RS11640at 2070.354 kb on + strand, within SGL_RS11640at 2070.362 kb on - strand, within SGL_RS11640at 2070.362 kb on - strand, within SGL_RS11640at 2070.543 kb on + strand, within SGL_RS11640at 2070.627 kb on + strand, within SGL_RS11640at 2070.690 kb on - strand, within SGL_RS11640at 2070.752 kb on + strand, within SGL_RS11640at 2070.827 kb on - strandat 2070.884 kb on - strandat 2070.916 kb on - strandat 2071.060 kb on + strand, within SGL_RS11645at 2071.074 kb on + strand, within SGL_RS11645at 2071.123 kb on - strand, within SGL_RS11645at 2071.169 kb on - strand, within SGL_RS11645at 2071.483 kb on - strand, within SGL_RS11650at 2071.523 kb on - strand, within SGL_RS11650at 2071.568 kb on + strand, within SGL_RS11650at 2071.739 kb on + strand, within SGL_RS11650at 2071.751 kb on + strand, within SGL_RS11650at 2071.805 kb on - strand, within SGL_RS11650at 2071.883 kb on + strand, within SGL_RS11650at 2071.998 kb on + strand, within SGL_RS11650at 2072.044 kb on - strandat 2072.044 kb on - strandat 2072.080 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,070,077 - +0.3
2,070,096 - +0.0
2,070,169 + SGL_RS11640 0.17 -0.1
2,070,170 - SGL_RS11640 0.17 -0.2
2,070,312 + SGL_RS11640 0.34 +0.7
2,070,312 + SGL_RS11640 0.34 +0.2
2,070,328 + SGL_RS11640 0.35 +0.5
2,070,354 + SGL_RS11640 0.38 -0.8
2,070,362 - SGL_RS11640 0.39 -0.1
2,070,362 - SGL_RS11640 0.39 -0.1
2,070,543 + SGL_RS11640 0.60 +0.4
2,070,627 + SGL_RS11640 0.70 +0.2
2,070,690 - SGL_RS11640 0.77 +0.3
2,070,752 + SGL_RS11640 0.84 +0.2
2,070,827 - -0.1
2,070,884 - +1.6
2,070,916 - -0.3
2,071,060 + SGL_RS11645 0.21 +0.1
2,071,074 + SGL_RS11645 0.24 +0.9
2,071,123 - SGL_RS11645 0.36 +1.0
2,071,169 - SGL_RS11645 0.48 -0.0
2,071,483 - SGL_RS11650 0.15 +0.8
2,071,523 - SGL_RS11650 0.21 -0.3
2,071,568 + SGL_RS11650 0.27 -0.4
2,071,739 + SGL_RS11650 0.52 -0.2
2,071,751 + SGL_RS11650 0.53 +0.1
2,071,805 - SGL_RS11650 0.61 +0.3
2,071,883 + SGL_RS11650 0.72 -0.1
2,071,998 + SGL_RS11650 0.89 +0.0
2,072,044 - +0.0
2,072,044 - +0.5
2,072,080 + +0.3

Or see this region's nucleotide sequence