Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11555

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11550 and SGL_RS11555 are separated by 159 nucleotidesSGL_RS11555 and SGL_RS11560 are separated by 13 nucleotidesSGL_RS11560 and SGL_RS11565 are separated by 122 nucleotides SGL_RS11550: SGL_RS11550 - hypothetical protein, at 2,046,961 to 2,047,335 _RS11550 SGL_RS11555: SGL_RS11555 - hypothetical protein, at 2,047,495 to 2,048,130 _RS11555 SGL_RS11560: SGL_RS11560 - DNA-directed RNA polymerase subunit omega, at 2,048,144 to 2,048,374 _RS11560 SGL_RS11565: SGL_RS11565 - IS4-like element IS4Sa family transposase, at 2,048,497 to 2,049,513 _RS11565 Position (kb) 2047 2048 2049Strain fitness (log2 ratio) -2 -1 0 1 2at 2046.929 kb on - strandat 2047.052 kb on + strand, within SGL_RS11550at 2047.437 kb on - strandat 2047.447 kb on - strandat 2047.541 kb on - strandat 2047.633 kb on - strand, within SGL_RS11555at 2047.875 kb on - strand, within SGL_RS11555at 2047.930 kb on - strand, within SGL_RS11555at 2047.988 kb on + strand, within SGL_RS11555at 2048.128 kb on - strandat 2048.313 kb on + strand, within SGL_RS11560at 2048.398 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,046,929 - -0.6
2,047,052 + SGL_RS11550 0.24 +0.1
2,047,437 - -0.1
2,047,447 - -1.3
2,047,541 - +0.2
2,047,633 - SGL_RS11555 0.22 +0.5
2,047,875 - SGL_RS11555 0.60 -0.6
2,047,930 - SGL_RS11555 0.68 +2.0
2,047,988 + SGL_RS11555 0.78 +0.2
2,048,128 - -0.0
2,048,313 + SGL_RS11560 0.73 -2.0
2,048,398 - -0.8

Or see this region's nucleotide sequence