Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11475

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11470 and SGL_RS11475 are separated by 130 nucleotidesSGL_RS11475 and SGL_RS11480 are separated by 59 nucleotides SGL_RS11470: SGL_RS11470 - carotenoid oxygenase family protein, at 2,031,001 to 2,032,473 _RS11470 SGL_RS11475: SGL_RS11475 - ATP-dependent Clp protease adapter ClpS, at 2,032,604 to 2,032,891 _RS11475 SGL_RS11480: SGL_RS11480 - glycosyltransferase, at 2,032,951 to 2,034,123 _RS11480 Position (kb) 2032 2033Strain fitness (log2 ratio) -1 0 1at 2031.834 kb on + strand, within SGL_RS11470at 2031.892 kb on - strand, within SGL_RS11470at 2031.902 kb on + strand, within SGL_RS11470at 2031.983 kb on - strand, within SGL_RS11470at 2032.042 kb on - strand, within SGL_RS11470at 2032.118 kb on + strand, within SGL_RS11470at 2032.268 kb on + strand, within SGL_RS11470at 2032.293 kb on - strand, within SGL_RS11470at 2032.338 kb on + strandat 2032.414 kb on - strandat 2032.414 kb on - strandat 2032.435 kb on - strandat 2032.698 kb on - strand, within SGL_RS11475at 2032.745 kb on + strand, within SGL_RS11475at 2032.748 kb on - strand, within SGL_RS11475at 2032.845 kb on - strand, within SGL_RS11475at 2032.862 kb on - strand, within SGL_RS11475at 2033.050 kb on - strandat 2033.175 kb on - strand, within SGL_RS11480at 2033.239 kb on - strand, within SGL_RS11480at 2033.302 kb on + strand, within SGL_RS11480at 2033.409 kb on - strand, within SGL_RS11480at 2033.487 kb on - strand, within SGL_RS11480at 2033.514 kb on + strand, within SGL_RS11480at 2033.514 kb on + strand, within SGL_RS11480at 2033.522 kb on - strand, within SGL_RS11480at 2033.623 kb on + strand, within SGL_RS11480at 2033.670 kb on - strand, within SGL_RS11480at 2033.752 kb on + strand, within SGL_RS11480

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,031,834 + SGL_RS11470 0.57 -0.1
2,031,892 - SGL_RS11470 0.60 +0.0
2,031,902 + SGL_RS11470 0.61 +0.2
2,031,983 - SGL_RS11470 0.67 -0.0
2,032,042 - SGL_RS11470 0.71 +0.4
2,032,118 + SGL_RS11470 0.76 -0.1
2,032,268 + SGL_RS11470 0.86 +0.1
2,032,293 - SGL_RS11470 0.88 -0.1
2,032,338 + +0.1
2,032,414 - +0.3
2,032,414 - +0.3
2,032,435 - +0.5
2,032,698 - SGL_RS11475 0.33 +0.4
2,032,745 + SGL_RS11475 0.49 -0.2
2,032,748 - SGL_RS11475 0.50 +0.4
2,032,845 - SGL_RS11475 0.84 +0.4
2,032,862 - SGL_RS11475 0.90 +0.5
2,033,050 - +1.4
2,033,175 - SGL_RS11480 0.19 -0.2
2,033,239 - SGL_RS11480 0.25 +0.0
2,033,302 + SGL_RS11480 0.30 +0.3
2,033,409 - SGL_RS11480 0.39 -0.1
2,033,487 - SGL_RS11480 0.46 +0.3
2,033,514 + SGL_RS11480 0.48 +0.1
2,033,514 + SGL_RS11480 0.48 +0.1
2,033,522 - SGL_RS11480 0.49 +0.3
2,033,623 + SGL_RS11480 0.57 -0.2
2,033,670 - SGL_RS11480 0.61 +0.1
2,033,752 + SGL_RS11480 0.68 -0.1

Or see this region's nucleotide sequence