Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11405

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11395 and SGL_RS11400 are separated by 62 nucleotidesSGL_RS11400 and SGL_RS11405 are separated by 15 nucleotidesSGL_RS11405 and SGL_RS11410 are separated by 4 nucleotidesSGL_RS11410 and SGL_RS11415 are separated by 216 nucleotides SGL_RS11395: SGL_RS11395 - TlyA family RNA methyltransferase, at 2,017,964 to 2,018,788 _RS11395 SGL_RS11400: SGL_RS11400 - hypothetical protein, at 2,018,851 to 2,019,237 _RS11400 SGL_RS11405: SGL_RS11405 - tetratricopeptide repeat protein, at 2,019,253 to 2,020,344 _RS11405 SGL_RS11410: SGL_RS11410 - DnaJ family molecular chaperone, at 2,020,349 to 2,021,035 _RS11410 SGL_RS11415: SGL_RS11415 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 2,021,252 to 2,021,944 _RS11415 Position (kb) 2019 2020 2021Strain fitness (log2 ratio) -1 0 1at 2018.310 kb on - strand, within SGL_RS11395at 2018.402 kb on + strand, within SGL_RS11395at 2018.408 kb on - strand, within SGL_RS11395at 2018.415 kb on - strand, within SGL_RS11395at 2018.564 kb on + strand, within SGL_RS11395at 2018.597 kb on + strand, within SGL_RS11395at 2018.610 kb on + strand, within SGL_RS11395at 2018.643 kb on - strand, within SGL_RS11395at 2018.866 kb on - strandat 2019.031 kb on + strand, within SGL_RS11400at 2019.872 kb on + strand, within SGL_RS11405at 2020.807 kb on + strand, within SGL_RS11410at 2020.835 kb on - strand, within SGL_RS11410at 2020.879 kb on + strand, within SGL_RS11410at 2020.902 kb on - strand, within SGL_RS11410at 2021.040 kb on - strandat 2021.146 kb on + strandat 2021.147 kb on + strandat 2021.219 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,018,310 - SGL_RS11395 0.42 -0.0
2,018,402 + SGL_RS11395 0.53 -0.7
2,018,408 - SGL_RS11395 0.54 +0.2
2,018,415 - SGL_RS11395 0.55 -0.1
2,018,564 + SGL_RS11395 0.73 -0.2
2,018,597 + SGL_RS11395 0.77 -0.1
2,018,610 + SGL_RS11395 0.78 +0.1
2,018,643 - SGL_RS11395 0.82 +0.2
2,018,866 - +0.1
2,019,031 + SGL_RS11400 0.47 +0.0
2,019,872 + SGL_RS11405 0.57 +0.3
2,020,807 + SGL_RS11410 0.67 -0.1
2,020,835 - SGL_RS11410 0.71 -0.1
2,020,879 + SGL_RS11410 0.77 -0.7
2,020,902 - SGL_RS11410 0.80 -0.1
2,021,040 - -0.5
2,021,146 + -0.1
2,021,147 + -0.0
2,021,219 - -1.3

Or see this region's nucleotide sequence