Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS11395 and SGL_RS11400 are separated by 62 nucleotides SGL_RS11400 and SGL_RS11405 are separated by 15 nucleotides SGL_RS11405 and SGL_RS11410 are separated by 4 nucleotides SGL_RS11410 and SGL_RS11415 are separated by 216 nucleotides
SGL_RS11395: SGL_RS11395 - TlyA family RNA methyltransferase, at 2,017,964 to 2,018,788
_RS11395
SGL_RS11400: SGL_RS11400 - hypothetical protein, at 2,018,851 to 2,019,237
_RS11400
SGL_RS11405: SGL_RS11405 - tetratricopeptide repeat protein, at 2,019,253 to 2,020,344
_RS11405
SGL_RS11410: SGL_RS11410 - DnaJ family molecular chaperone, at 2,020,349 to 2,021,035
_RS11410
SGL_RS11415: SGL_RS11415 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 2,021,252 to 2,021,944
_RS11415
Position (kb)
2019
2020
2021 Strain fitness (log2 ratio)
-1
0
1 at 2018.310 kb on - strand, within SGL_RS11395 at 2018.402 kb on + strand, within SGL_RS11395 at 2018.408 kb on - strand, within SGL_RS11395 at 2018.415 kb on - strand, within SGL_RS11395 at 2018.564 kb on + strand, within SGL_RS11395 at 2018.597 kb on + strand, within SGL_RS11395 at 2018.610 kb on + strand, within SGL_RS11395 at 2018.643 kb on - strand, within SGL_RS11395 at 2018.866 kb on - strand at 2019.031 kb on + strand, within SGL_RS11400 at 2019.872 kb on + strand, within SGL_RS11405 at 2020.807 kb on + strand, within SGL_RS11410 at 2020.835 kb on - strand, within SGL_RS11410 at 2020.879 kb on + strand, within SGL_RS11410 at 2020.902 kb on - strand, within SGL_RS11410 at 2021.040 kb on - strand at 2021.146 kb on + strand at 2021.147 kb on + strand at 2021.219 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 2,018,310 - SGL_RS11395 0.42 -0.0 2,018,402 + SGL_RS11395 0.53 -0.7 2,018,408 - SGL_RS11395 0.54 +0.2 2,018,415 - SGL_RS11395 0.55 -0.1 2,018,564 + SGL_RS11395 0.73 -0.2 2,018,597 + SGL_RS11395 0.77 -0.1 2,018,610 + SGL_RS11395 0.78 +0.1 2,018,643 - SGL_RS11395 0.82 +0.2 2,018,866 - +0.1 2,019,031 + SGL_RS11400 0.47 +0.0 2,019,872 + SGL_RS11405 0.57 +0.3 2,020,807 + SGL_RS11410 0.67 -0.1 2,020,835 - SGL_RS11410 0.71 -0.1 2,020,879 + SGL_RS11410 0.77 -0.7 2,020,902 - SGL_RS11410 0.80 -0.1 2,021,040 - -0.5 2,021,146 + -0.1 2,021,147 + -0.0 2,021,219 - -1.3
Or see this region's nucleotide sequence