Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11215

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11205 and SGL_RS11210 are separated by 93 nucleotidesSGL_RS11210 and SGL_RS11215 are separated by 144 nucleotidesSGL_RS11215 and SGL_RS11220 are separated by 78 nucleotides SGL_RS11205: SGL_RS11205 - FHA domain-containing protein, at 1,975,056 to 1,975,481 _RS11205 SGL_RS11210: SGL_RS11210 - 2Fe-2S iron-sulfur cluster-binding protein, at 1,975,575 to 1,975,874 _RS11210 SGL_RS11215: SGL_RS11215 - HEAT repeat domain-containing protein, at 1,976,019 to 1,976,720 _RS11215 SGL_RS11220: SGL_RS11220 - NDP-sugar synthase, at 1,976,799 to 1,977,965 _RS11220 Position (kb) 1976 1977Strain fitness (log2 ratio) -1 0 1at 1975.023 kb on - strandat 1975.087 kb on - strandat 1975.104 kb on + strand, within SGL_RS11205at 1975.112 kb on - strand, within SGL_RS11205at 1975.311 kb on + strand, within SGL_RS11205at 1975.319 kb on - strand, within SGL_RS11205at 1975.319 kb on - strand, within SGL_RS11205at 1975.319 kb on - strand, within SGL_RS11205at 1975.394 kb on + strand, within SGL_RS11205at 1975.455 kb on - strandat 1975.478 kb on - strandat 1975.537 kb on - strandat 1975.572 kb on + strandat 1975.580 kb on - strandat 1975.587 kb on - strandat 1975.713 kb on + strand, within SGL_RS11210at 1975.825 kb on - strand, within SGL_RS11210at 1975.825 kb on - strand, within SGL_RS11210at 1975.843 kb on - strand, within SGL_RS11210at 1975.897 kb on - strandat 1976.100 kb on - strand, within SGL_RS11215at 1976.138 kb on + strand, within SGL_RS11215at 1976.214 kb on + strand, within SGL_RS11215at 1976.246 kb on + strand, within SGL_RS11215at 1976.396 kb on + strand, within SGL_RS11215at 1976.404 kb on - strand, within SGL_RS11215at 1976.671 kb on - strandat 1976.701 kb on + strandat 1976.793 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,975,023 - -0.6
1,975,087 - +0.7
1,975,104 + SGL_RS11205 0.11 +0.1
1,975,112 - SGL_RS11205 0.13 -0.3
1,975,311 + SGL_RS11205 0.60 +0.2
1,975,319 - SGL_RS11205 0.62 -0.1
1,975,319 - SGL_RS11205 0.62 +0.6
1,975,319 - SGL_RS11205 0.62 +0.5
1,975,394 + SGL_RS11205 0.79 +0.2
1,975,455 - +0.2
1,975,478 - -0.3
1,975,537 - +0.4
1,975,572 + -0.1
1,975,580 - -0.1
1,975,587 - +0.2
1,975,713 + SGL_RS11210 0.46 -0.3
1,975,825 - SGL_RS11210 0.83 -0.0
1,975,825 - SGL_RS11210 0.83 -0.0
1,975,843 - SGL_RS11210 0.89 -1.1
1,975,897 - +0.1
1,976,100 - SGL_RS11215 0.12 +0.5
1,976,138 + SGL_RS11215 0.17 +0.4
1,976,214 + SGL_RS11215 0.28 -0.2
1,976,246 + SGL_RS11215 0.32 +0.0
1,976,396 + SGL_RS11215 0.54 +1.1
1,976,404 - SGL_RS11215 0.55 +0.4
1,976,671 - -0.3
1,976,701 + -0.3
1,976,793 - -0.9

Or see this region's nucleotide sequence