Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10165 and SGL_RS10175 are separated by 439 nucleotides SGL_RS10175 and SGL_RS10180 are separated by 69 nucleotides SGL_RS10180 and SGL_RS10185 are separated by 9 nucleotides SGL_RS10185 and SGL_RS10190 are separated by 60 nucleotides
SGL_RS10165: SGL_RS10165 - tetratricopeptide repeat protein, at 1,754,634 to 1,755,152
_RS10165
SGL_RS10175: SGL_RS10175 - hypothetical protein, at 1,755,592 to 1,755,912
_RS10175
SGL_RS10180: SGL_RS10180 - GUN4 domain-containing protein, at 1,755,982 to 1,756,584
_RS10180
SGL_RS10185: SGL_RS10185 - Vat family streptogramin A O-acetyltransferase, at 1,756,594 to 1,757,223
_RS10185
SGL_RS10190: SGL_RS10190 - HypC/HybG/HupF family hydrogenase formation chaperone, at 1,757,284 to 1,757,514
_RS10190
Position (kb)
1755
1756
1757 Strain fitness (log2 ratio)
-1
0
1 at 1755.074 kb on - strand, within SGL_RS10165 at 1755.131 kb on - strand at 1755.134 kb on - strand at 1755.145 kb on - strand at 1755.327 kb on - strand at 1756.005 kb on - strand at 1756.035 kb on - strand at 1756.071 kb on - strand, within SGL_RS10180 at 1756.233 kb on + strand, within SGL_RS10180 at 1756.241 kb on - strand, within SGL_RS10180 at 1756.273 kb on - strand, within SGL_RS10180 at 1756.599 kb on - strand at 1756.695 kb on - strand, within SGL_RS10185 at 1757.014 kb on - strand, within SGL_RS10185 at 1757.289 kb on - strand at 1757.471 kb on - strand, within SGL_RS10190 at 1757.502 kb on + strand at 1757.507 kb on + strand at 1757.510 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 1,755,074 - SGL_RS10165 0.85 -0.2 1,755,131 - +0.5 1,755,134 - -0.7 1,755,145 - +0.2 1,755,327 - +0.1 1,756,005 - -0.4 1,756,035 - +0.7 1,756,071 - SGL_RS10180 0.15 +1.0 1,756,233 + SGL_RS10180 0.42 +0.6 1,756,241 - SGL_RS10180 0.43 -0.7 1,756,273 - SGL_RS10180 0.48 +0.1 1,756,599 - +0.1 1,756,695 - SGL_RS10185 0.16 -0.1 1,757,014 - SGL_RS10185 0.67 -0.3 1,757,289 - -0.1 1,757,471 - SGL_RS10190 0.81 +0.1 1,757,502 + +0.2 1,757,507 + +0.1 1,757,510 - -0.1
Or see this region's nucleotide sequence