Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10180

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10165 and SGL_RS10175 are separated by 439 nucleotidesSGL_RS10175 and SGL_RS10180 are separated by 69 nucleotidesSGL_RS10180 and SGL_RS10185 are separated by 9 nucleotidesSGL_RS10185 and SGL_RS10190 are separated by 60 nucleotides SGL_RS10165: SGL_RS10165 - tetratricopeptide repeat protein, at 1,754,634 to 1,755,152 _RS10165 SGL_RS10175: SGL_RS10175 - hypothetical protein, at 1,755,592 to 1,755,912 _RS10175 SGL_RS10180: SGL_RS10180 - GUN4 domain-containing protein, at 1,755,982 to 1,756,584 _RS10180 SGL_RS10185: SGL_RS10185 - Vat family streptogramin A O-acetyltransferase, at 1,756,594 to 1,757,223 _RS10185 SGL_RS10190: SGL_RS10190 - HypC/HybG/HupF family hydrogenase formation chaperone, at 1,757,284 to 1,757,514 _RS10190 Position (kb) 1755 1756 1757Strain fitness (log2 ratio) -1 0 1at 1755.074 kb on - strand, within SGL_RS10165at 1755.131 kb on - strandat 1755.134 kb on - strandat 1755.145 kb on - strandat 1755.327 kb on - strandat 1756.005 kb on - strandat 1756.035 kb on - strandat 1756.071 kb on - strand, within SGL_RS10180at 1756.233 kb on + strand, within SGL_RS10180at 1756.241 kb on - strand, within SGL_RS10180at 1756.273 kb on - strand, within SGL_RS10180at 1756.599 kb on - strandat 1756.695 kb on - strand, within SGL_RS10185at 1757.014 kb on - strand, within SGL_RS10185at 1757.289 kb on - strandat 1757.471 kb on - strand, within SGL_RS10190at 1757.502 kb on + strandat 1757.507 kb on + strandat 1757.510 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,755,074 - SGL_RS10165 0.85 -0.2
1,755,131 - +0.5
1,755,134 - -0.7
1,755,145 - +0.2
1,755,327 - +0.1
1,756,005 - -0.4
1,756,035 - +0.7
1,756,071 - SGL_RS10180 0.15 +1.0
1,756,233 + SGL_RS10180 0.42 +0.6
1,756,241 - SGL_RS10180 0.43 -0.7
1,756,273 - SGL_RS10180 0.48 +0.1
1,756,599 - +0.1
1,756,695 - SGL_RS10185 0.16 -0.1
1,757,014 - SGL_RS10185 0.67 -0.3
1,757,289 - -0.1
1,757,471 - SGL_RS10190 0.81 +0.1
1,757,502 + +0.2
1,757,507 + +0.1
1,757,510 - -0.1

Or see this region's nucleotide sequence