Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09770

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS19200 and SGL_RS09770 are separated by 62 nucleotidesSGL_RS09770 and SGL_RS09775 are separated by 382 nucleotides SGL_RS19200: SGL_RS19200 - IS5 family transposase, at 1,679,360 to 1,679,938 _RS19200 SGL_RS09770: SGL_RS09770 - hypothetical protein, at 1,680,001 to 1,680,279 _RS09770 SGL_RS09775: SGL_RS09775 - phosphoglucosamine mutase, at 1,680,662 to 1,682,134 _RS09775 Position (kb) 1680 1681Strain fitness (log2 ratio) -1 0 1at 1679.090 kb on + strandat 1679.099 kb on + strandat 1679.369 kb on + strandat 1679.497 kb on - strand, within SGL_RS19200at 1679.497 kb on - strand, within SGL_RS19200at 1679.758 kb on - strand, within SGL_RS19200at 1679.859 kb on - strand, within SGL_RS19200at 1680.066 kb on - strand, within SGL_RS09770

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
1,679,090 + +0.2
1,679,099 + +0.1
1,679,369 + +0.1
1,679,497 - SGL_RS19200 0.24 +0.3
1,679,497 - SGL_RS19200 0.24 -0.1
1,679,758 - SGL_RS19200 0.69 -0.2
1,679,859 - SGL_RS19200 0.86 -0.3
1,680,066 - SGL_RS09770 0.23 +0.4

Or see this region's nucleotide sequence