Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09580

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09575 and SGL_RS09580 are separated by 266 nucleotidesSGL_RS09580 and SGL_RS09585 are separated by 39 nucleotides SGL_RS09575: SGL_RS09575 - hypothetical protein, at 1,639,944 to 1,640,519 _RS09575 SGL_RS09580: SGL_RS09580 - DUF29 domain-containing protein, at 1,640,786 to 1,641,238 _RS09580 SGL_RS09585: SGL_RS09585 - glycosyltransferase family 2 protein, at 1,641,278 to 1,642,207 _RS09585 Position (kb) 1640 1641 1642Strain fitness (log2 ratio) -1 0 1at 1639.799 kb on - strandat 1639.909 kb on + strandat 1639.914 kb on + strandat 1639.914 kb on + strandat 1639.962 kb on - strandat 1639.984 kb on + strandat 1640.002 kb on - strand, within SGL_RS09575at 1640.130 kb on + strand, within SGL_RS09575at 1640.149 kb on - strand, within SGL_RS09575at 1640.165 kb on + strand, within SGL_RS09575at 1640.249 kb on + strand, within SGL_RS09575at 1640.360 kb on - strand, within SGL_RS09575at 1640.362 kb on + strand, within SGL_RS09575at 1640.403 kb on - strand, within SGL_RS09575at 1640.406 kb on - strand, within SGL_RS09575at 1640.406 kb on - strand, within SGL_RS09575at 1640.480 kb on - strandat 1640.524 kb on - strandat 1640.557 kb on + strandat 1640.599 kb on + strandat 1640.610 kb on + strandat 1640.644 kb on + strandat 1640.696 kb on - strandat 1640.991 kb on - strand, within SGL_RS09580at 1641.067 kb on - strand, within SGL_RS09580at 1641.110 kb on + strand, within SGL_RS09580at 1641.260 kb on - strandat 1641.368 kb on - strandat 1641.604 kb on - strand, within SGL_RS09585at 1641.611 kb on - strand, within SGL_RS09585at 1641.649 kb on + strand, within SGL_RS09585at 1641.649 kb on + strand, within SGL_RS09585at 1641.657 kb on - strand, within SGL_RS09585at 1641.668 kb on + strand, within SGL_RS09585at 1641.784 kb on + strand, within SGL_RS09585at 1641.784 kb on + strand, within SGL_RS09585at 1641.879 kb on + strand, within SGL_RS09585at 1641.934 kb on + strand, within SGL_RS09585at 1641.941 kb on + strand, within SGL_RS09585at 1641.949 kb on - strand, within SGL_RS09585at 1641.985 kb on - strand, within SGL_RS09585at 1642.027 kb on - strand, within SGL_RS09585at 1642.069 kb on + strand, within SGL_RS09585at 1642.072 kb on - strand, within SGL_RS09585at 1642.072 kb on - strand, within SGL_RS09585at 1642.102 kb on + strand, within SGL_RS09585at 1642.112 kb on + strand, within SGL_RS09585at 1642.163 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,639,799 - -0.5
1,639,909 + +1.5
1,639,914 + -0.1
1,639,914 + -0.6
1,639,962 - +0.2
1,639,984 + +0.0
1,640,002 - SGL_RS09575 0.10 -0.7
1,640,130 + SGL_RS09575 0.32 +0.1
1,640,149 - SGL_RS09575 0.36 -0.4
1,640,165 + SGL_RS09575 0.38 +0.0
1,640,249 + SGL_RS09575 0.53 +0.6
1,640,360 - SGL_RS09575 0.72 -0.4
1,640,362 + SGL_RS09575 0.73 +0.2
1,640,403 - SGL_RS09575 0.80 -0.1
1,640,406 - SGL_RS09575 0.80 +0.4
1,640,406 - SGL_RS09575 0.80 -0.0
1,640,480 - -0.4
1,640,524 - +0.2
1,640,557 + +0.1
1,640,599 + +0.7
1,640,610 + +0.1
1,640,644 + +0.2
1,640,696 - +0.1
1,640,991 - SGL_RS09580 0.45 +0.7
1,641,067 - SGL_RS09580 0.62 +0.6
1,641,110 + SGL_RS09580 0.72 -0.2
1,641,260 - +0.3
1,641,368 - +0.3
1,641,604 - SGL_RS09585 0.35 -0.1
1,641,611 - SGL_RS09585 0.36 +0.1
1,641,649 + SGL_RS09585 0.40 -0.2
1,641,649 + SGL_RS09585 0.40 +0.1
1,641,657 - SGL_RS09585 0.41 +0.0
1,641,668 + SGL_RS09585 0.42 +0.3
1,641,784 + SGL_RS09585 0.54 -0.2
1,641,784 + SGL_RS09585 0.54 +0.3
1,641,879 + SGL_RS09585 0.65 +1.3
1,641,934 + SGL_RS09585 0.71 -1.1
1,641,941 + SGL_RS09585 0.71 +0.2
1,641,949 - SGL_RS09585 0.72 +0.1
1,641,985 - SGL_RS09585 0.76 +0.5
1,642,027 - SGL_RS09585 0.81 -0.0
1,642,069 + SGL_RS09585 0.85 -0.2
1,642,072 - SGL_RS09585 0.85 +0.4
1,642,072 - SGL_RS09585 0.85 -0.1
1,642,102 + SGL_RS09585 0.89 -0.3
1,642,112 + SGL_RS09585 0.90 +0.3
1,642,163 + -0.2

Or see this region's nucleotide sequence