Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08740

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08735 and SGL_RS18815 are separated by 88 nucleotidesSGL_RS18815 and SGL_RS08740 are separated by 82 nucleotidesSGL_RS08740 and SGL_RS08745 are separated by 176 nucleotides SGL_RS08735: SGL_RS08735 - DUF3488 and DUF4129 domain-containing transglutaminase family protein, at 1,464,954 to 1,467,266 _RS08735 SGL_RS18815: SGL_RS18815 - transposase, at 1,467,355 to 1,467,693 _RS18815 SGL_RS08740: SGL_RS08740 - hypothetical protein, at 1,467,776 to 1,467,976 _RS08740 SGL_RS08745: SGL_RS08745 - ATP-dependent sacrificial sulfur transferase LarE, at 1,468,153 to 1,468,959 _RS08745 Position (kb) 1467 1468Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1466.832 kb on - strand, within SGL_RS08735at 1466.868 kb on + strand, within SGL_RS08735at 1466.891 kb on + strand, within SGL_RS08735at 1466.909 kb on - strand, within SGL_RS08735at 1467.075 kb on - strandat 1467.116 kb on - strandat 1467.116 kb on - strandat 1467.116 kb on - strandat 1467.156 kb on + strandat 1467.235 kb on + strandat 1467.243 kb on - strandat 1467.255 kb on + strandat 1467.650 kb on + strand, within SGL_RS18815at 1467.798 kb on + strand, within SGL_RS08740at 1467.841 kb on - strand, within SGL_RS08740at 1467.841 kb on - strand, within SGL_RS08740at 1467.851 kb on - strand, within SGL_RS08740at 1467.965 kb on + strandat 1468.231 kb on + strandat 1468.308 kb on - strand, within SGL_RS08745at 1468.375 kb on - strand, within SGL_RS08745at 1468.559 kb on - strand, within SGL_RS08745at 1468.644 kb on + strand, within SGL_RS08745at 1468.644 kb on + strand, within SGL_RS08745at 1468.912 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,466,832 - SGL_RS08735 0.81 -0.1
1,466,868 + SGL_RS08735 0.83 +0.1
1,466,891 + SGL_RS08735 0.84 -0.2
1,466,909 - SGL_RS08735 0.85 -0.0
1,467,075 - +0.3
1,467,116 - -0.0
1,467,116 - +0.1
1,467,116 - -0.3
1,467,156 + -0.4
1,467,235 + -0.3
1,467,243 - +0.1
1,467,255 + +0.1
1,467,650 + SGL_RS18815 0.87 -0.3
1,467,798 + SGL_RS08740 0.11 +0.4
1,467,841 - SGL_RS08740 0.32 +0.1
1,467,841 - SGL_RS08740 0.32 +0.6
1,467,851 - SGL_RS08740 0.37 -0.1
1,467,965 + +0.6
1,468,231 + -2.9
1,468,308 - SGL_RS08745 0.19 -3.8
1,468,375 - SGL_RS08745 0.28 -2.7
1,468,559 - SGL_RS08745 0.50 -3.5
1,468,644 + SGL_RS08745 0.61 -3.5
1,468,644 + SGL_RS08745 0.61 -3.1
1,468,912 - -1.7

Or see this region's nucleotide sequence