Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07975

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07970 and SGL_RS07975 are separated by 14 nucleotidesSGL_RS07975 and SGL_RS07980 are separated by 514 nucleotides SGL_RS07970: SGL_RS07970 - pentapeptide repeat-containing protein, at 1,300,661 to 1,301,656 _RS07970 SGL_RS07975: SGL_RS07975 - RNA polymerase sigma factor, RpoD/SigA family, at 1,301,671 to 1,302,780 _RS07975 SGL_RS07980: SGL_RS07980 - threonine synthase, at 1,303,295 to 1,304,596 _RS07980 Position (kb) 1301 1302 1303Strain fitness (log2 ratio) -1 0 1at 1300.761 kb on + strand, within SGL_RS07970at 1300.871 kb on + strand, within SGL_RS07970at 1300.872 kb on + strand, within SGL_RS07970at 1300.879 kb on - strand, within SGL_RS07970at 1300.901 kb on + strand, within SGL_RS07970at 1300.901 kb on + strand, within SGL_RS07970at 1300.909 kb on - strand, within SGL_RS07970at 1300.949 kb on - strand, within SGL_RS07970at 1301.014 kb on - strand, within SGL_RS07970at 1301.021 kb on + strand, within SGL_RS07970at 1301.029 kb on - strand, within SGL_RS07970at 1301.039 kb on - strand, within SGL_RS07970at 1301.039 kb on - strand, within SGL_RS07970at 1301.039 kb on - strand, within SGL_RS07970at 1301.039 kb on - strand, within SGL_RS07970at 1301.039 kb on - strand, within SGL_RS07970at 1301.109 kb on + strand, within SGL_RS07970at 1301.121 kb on + strand, within SGL_RS07970at 1301.137 kb on + strand, within SGL_RS07970at 1301.137 kb on - strand, within SGL_RS07970at 1301.182 kb on - strand, within SGL_RS07970at 1301.197 kb on - strand, within SGL_RS07970at 1301.224 kb on + strand, within SGL_RS07970at 1301.424 kb on + strand, within SGL_RS07970at 1301.429 kb on + strand, within SGL_RS07970at 1301.457 kb on - strand, within SGL_RS07970at 1301.462 kb on - strand, within SGL_RS07970at 1301.538 kb on - strand, within SGL_RS07970at 1301.572 kb on - strandat 1301.579 kb on + strandat 1301.634 kb on + strandat 1301.770 kb on - strandat 1301.792 kb on + strand, within SGL_RS07975at 1301.985 kb on + strand, within SGL_RS07975at 1302.001 kb on - strand, within SGL_RS07975at 1302.046 kb on + strand, within SGL_RS07975at 1302.196 kb on + strand, within SGL_RS07975at 1302.308 kb on - strand, within SGL_RS07975at 1302.323 kb on - strand, within SGL_RS07975at 1302.419 kb on + strand, within SGL_RS07975at 1302.456 kb on - strand, within SGL_RS07975at 1302.575 kb on - strand, within SGL_RS07975at 1302.608 kb on - strand, within SGL_RS07975at 1302.839 kb on - strandat 1302.920 kb on - strandat 1302.920 kb on - strandat 1303.181 kb on - strandat 1303.343 kb on + strandat 1303.362 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,300,761 + SGL_RS07970 0.10 +0.2
1,300,871 + SGL_RS07970 0.21 +0.5
1,300,872 + SGL_RS07970 0.21 -0.2
1,300,879 - SGL_RS07970 0.22 -0.2
1,300,901 + SGL_RS07970 0.24 +0.1
1,300,901 + SGL_RS07970 0.24 -0.3
1,300,909 - SGL_RS07970 0.25 -0.7
1,300,949 - SGL_RS07970 0.29 -0.1
1,301,014 - SGL_RS07970 0.35 +0.2
1,301,021 + SGL_RS07970 0.36 -0.4
1,301,029 - SGL_RS07970 0.37 +0.1
1,301,039 - SGL_RS07970 0.38 +0.3
1,301,039 - SGL_RS07970 0.38 +0.1
1,301,039 - SGL_RS07970 0.38 +0.1
1,301,039 - SGL_RS07970 0.38 -0.3
1,301,039 - SGL_RS07970 0.38 -0.8
1,301,109 + SGL_RS07970 0.45 +0.1
1,301,121 + SGL_RS07970 0.46 +0.1
1,301,137 + SGL_RS07970 0.48 -0.2
1,301,137 - SGL_RS07970 0.48 -0.3
1,301,182 - SGL_RS07970 0.52 +0.1
1,301,197 - SGL_RS07970 0.54 +0.2
1,301,224 + SGL_RS07970 0.57 +0.3
1,301,424 + SGL_RS07970 0.77 -0.1
1,301,429 + SGL_RS07970 0.77 +0.1
1,301,457 - SGL_RS07970 0.80 -0.1
1,301,462 - SGL_RS07970 0.80 +0.1
1,301,538 - SGL_RS07970 0.88 +0.1
1,301,572 - +0.1
1,301,579 + +0.2
1,301,634 + -0.1
1,301,770 - +0.4
1,301,792 + SGL_RS07975 0.11 +0.0
1,301,985 + SGL_RS07975 0.28 +0.1
1,302,001 - SGL_RS07975 0.30 -0.5
1,302,046 + SGL_RS07975 0.34 +0.2
1,302,196 + SGL_RS07975 0.47 -0.1
1,302,308 - SGL_RS07975 0.57 +0.7
1,302,323 - SGL_RS07975 0.59 +0.2
1,302,419 + SGL_RS07975 0.67 +0.0
1,302,456 - SGL_RS07975 0.71 +0.3
1,302,575 - SGL_RS07975 0.81 +0.3
1,302,608 - SGL_RS07975 0.84 +1.3
1,302,839 - +0.3
1,302,920 - +0.1
1,302,920 - +0.1
1,303,181 - -0.1
1,303,343 + +0.1
1,303,362 - +0.2

Or see this region's nucleotide sequence