Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07730

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07720 and SGL_RS07725 are separated by 57 nucleotidesSGL_RS07725 and SGL_RS07730 are separated by 61 nucleotidesSGL_RS07730 and SGL_RS07735 are separated by 53 nucleotidesSGL_RS07735 and SGL_RS07740 are separated by 159 nucleotides SGL_RS07720: SGL_RS07720 - phosphate acetyltransferase, at 1,250,442 to 1,252,535 _RS07720 SGL_RS07725: SGL_RS07725 - hypothetical protein, at 1,252,593 to 1,253,207 _RS07725 SGL_RS07730: SGL_RS07730 - DNA/RNA nuclease SfsA, at 1,253,269 to 1,253,982 _RS07730 SGL_RS07735: SGL_RS07735 - DUF1997 domain-containing protein, at 1,254,036 to 1,254,623 _RS07735 SGL_RS07740: SGL_RS07740 - RNA polymerase sigma factor, RpoD/SigA family, at 1,254,783 to 1,255,739 _RS07740 Position (kb) 1253 1254Strain fitness (log2 ratio) -1 0 1at 1252.285 kb on - strand, within SGL_RS07720at 1252.292 kb on + strand, within SGL_RS07720at 1252.302 kb on - strand, within SGL_RS07720at 1252.387 kb on + strandat 1252.725 kb on + strand, within SGL_RS07725at 1252.733 kb on - strand, within SGL_RS07725at 1252.855 kb on + strand, within SGL_RS07725at 1252.941 kb on - strand, within SGL_RS07725at 1252.971 kb on - strand, within SGL_RS07725at 1253.205 kb on - strandat 1253.283 kb on - strandat 1253.354 kb on + strand, within SGL_RS07730at 1253.443 kb on + strand, within SGL_RS07730at 1253.704 kb on - strand, within SGL_RS07730at 1253.776 kb on + strand, within SGL_RS07730at 1253.776 kb on + strand, within SGL_RS07730at 1253.815 kb on - strand, within SGL_RS07730at 1253.852 kb on - strand, within SGL_RS07730at 1253.852 kb on - strand, within SGL_RS07730at 1253.870 kb on - strand, within SGL_RS07730at 1253.876 kb on + strand, within SGL_RS07730at 1253.950 kb on + strandat 1254.100 kb on + strand, within SGL_RS07735at 1254.108 kb on + strand, within SGL_RS07735at 1254.211 kb on - strand, within SGL_RS07735at 1254.272 kb on + strand, within SGL_RS07735at 1254.280 kb on - strand, within SGL_RS07735at 1254.332 kb on + strand, within SGL_RS07735at 1254.567 kb on - strandat 1254.571 kb on + strandat 1254.903 kb on + strand, within SGL_RS07740at 1254.911 kb on - strand, within SGL_RS07740at 1254.917 kb on - strand, within SGL_RS07740

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,252,285 - SGL_RS07720 0.88 +0.1
1,252,292 + SGL_RS07720 0.88 -0.1
1,252,302 - SGL_RS07720 0.89 +0.2
1,252,387 + +0.0
1,252,725 + SGL_RS07725 0.21 -0.0
1,252,733 - SGL_RS07725 0.23 -0.5
1,252,855 + SGL_RS07725 0.43 +0.3
1,252,941 - SGL_RS07725 0.57 -1.1
1,252,971 - SGL_RS07725 0.61 -0.2
1,253,205 - -0.5
1,253,283 - -0.2
1,253,354 + SGL_RS07730 0.12 +0.2
1,253,443 + SGL_RS07730 0.24 +0.7
1,253,704 - SGL_RS07730 0.61 +0.3
1,253,776 + SGL_RS07730 0.71 +0.1
1,253,776 + SGL_RS07730 0.71 +0.8
1,253,815 - SGL_RS07730 0.76 +0.2
1,253,852 - SGL_RS07730 0.82 +1.4
1,253,852 - SGL_RS07730 0.82 -0.3
1,253,870 - SGL_RS07730 0.84 -0.1
1,253,876 + SGL_RS07730 0.85 +0.1
1,253,950 + +0.5
1,254,100 + SGL_RS07735 0.11 +0.2
1,254,108 + SGL_RS07735 0.12 +0.2
1,254,211 - SGL_RS07735 0.30 -0.1
1,254,272 + SGL_RS07735 0.40 -0.0
1,254,280 - SGL_RS07735 0.41 +0.1
1,254,332 + SGL_RS07735 0.50 -0.4
1,254,567 - -0.2
1,254,571 + -0.5
1,254,903 + SGL_RS07740 0.13 -0.8
1,254,911 - SGL_RS07740 0.13 +0.3
1,254,917 - SGL_RS07740 0.14 +1.2

Or see this region's nucleotide sequence