Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06670

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06660 and SGL_RS06665 are separated by 165 nucleotidesSGL_RS06665 and SGL_RS06670 are separated by 172 nucleotidesSGL_RS06670 and SGL_RS06675 are separated by 68 nucleotides SGL_RS06660: SGL_RS06660 - DNA helicase PcrA, at 1,022,278 to 1,024,659 _RS06660 SGL_RS06665: SGL_RS06665 - bifunctional nuclease family protein, at 1,024,825 to 1,025,346 _RS06665 SGL_RS06670: SGL_RS06670 - TIGR01777 family oxidoreductase, at 1,025,519 to 1,026,442 _RS06670 SGL_RS06675: SGL_RS06675 - ABC transporter ATP-binding protein, at 1,026,511 to 1,027,737 _RS06675 Position (kb) 1025 1026 1027Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1024.524 kb on + strandat 1024.559 kb on + strandat 1024.624 kb on - strandat 1024.626 kb on + strandat 1024.626 kb on + strandat 1024.634 kb on - strandat 1024.671 kb on + strandat 1024.793 kb on + strandat 1024.866 kb on - strandat 1024.879 kb on - strand, within SGL_RS06665at 1025.070 kb on + strand, within SGL_RS06665at 1025.070 kb on + strand, within SGL_RS06665at 1025.072 kb on + strand, within SGL_RS06665at 1025.075 kb on + strand, within SGL_RS06665at 1025.075 kb on + strand, within SGL_RS06665at 1025.078 kb on - strand, within SGL_RS06665at 1025.078 kb on - strand, within SGL_RS06665at 1025.276 kb on + strand, within SGL_RS06665at 1025.420 kb on + strandat 1025.421 kb on - strandat 1025.428 kb on - strandat 1025.590 kb on - strandat 1025.616 kb on + strand, within SGL_RS06670at 1025.628 kb on - strand, within SGL_RS06670at 1025.703 kb on + strand, within SGL_RS06670at 1025.974 kb on + strand, within SGL_RS06670at 1026.038 kb on + strand, within SGL_RS06670at 1026.082 kb on + strand, within SGL_RS06670at 1026.114 kb on + strand, within SGL_RS06670at 1026.225 kb on - strand, within SGL_RS06670at 1026.263 kb on + strand, within SGL_RS06670at 1026.456 kb on - strandat 1026.597 kb on + strandat 1026.811 kb on - strand, within SGL_RS06675at 1026.817 kb on + strand, within SGL_RS06675at 1026.896 kb on + strand, within SGL_RS06675at 1027.087 kb on - strand, within SGL_RS06675at 1027.239 kb on + strand, within SGL_RS06675at 1027.304 kb on - strand, within SGL_RS06675at 1027.349 kb on + strand, within SGL_RS06675

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,024,524 + +0.5
1,024,559 + +1.3
1,024,624 - +0.3
1,024,626 + -0.1
1,024,626 + -0.2
1,024,634 - +0.2
1,024,671 + -0.0
1,024,793 + +0.2
1,024,866 - +0.1
1,024,879 - SGL_RS06665 0.10 -0.0
1,025,070 + SGL_RS06665 0.47 -0.8
1,025,070 + SGL_RS06665 0.47 -0.9
1,025,072 + SGL_RS06665 0.47 -0.8
1,025,075 + SGL_RS06665 0.48 +0.1
1,025,075 + SGL_RS06665 0.48 -0.4
1,025,078 - SGL_RS06665 0.48 -0.6
1,025,078 - SGL_RS06665 0.48 -0.2
1,025,276 + SGL_RS06665 0.86 +0.3
1,025,420 + +0.2
1,025,421 - -0.1
1,025,428 - -0.3
1,025,590 - +0.1
1,025,616 + SGL_RS06670 0.10 +0.7
1,025,628 - SGL_RS06670 0.12 +0.4
1,025,703 + SGL_RS06670 0.20 +0.2
1,025,974 + SGL_RS06670 0.49 +0.3
1,026,038 + SGL_RS06670 0.56 -0.3
1,026,082 + SGL_RS06670 0.61 -0.1
1,026,114 + SGL_RS06670 0.64 +0.5
1,026,225 - SGL_RS06670 0.76 +0.1
1,026,263 + SGL_RS06670 0.81 +1.3
1,026,456 - +0.4
1,026,597 + -1.3
1,026,811 - SGL_RS06675 0.24 -3.2
1,026,817 + SGL_RS06675 0.25 -4.6
1,026,896 + SGL_RS06675 0.31 -2.2
1,027,087 - SGL_RS06675 0.47 -2.3
1,027,239 + SGL_RS06675 0.59 -2.6
1,027,304 - SGL_RS06675 0.65 -2.3
1,027,349 + SGL_RS06675 0.68 -3.9

Or see this region's nucleotide sequence