Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05965 and SGL_RS05970 are separated by 142 nucleotides SGL_RS05970 and SGL_RS05975 are separated by 153 nucleotides SGL_RS05975 and SGL_RS05980 are separated by 28 nucleotides
SGL_RS05965: SGL_RS05965 - phosphotransferase enzyme family protein, at 873,465 to 874,550
_RS05965
SGL_RS05970: SGL_RS05970 - DUF533 domain-containing protein, at 874,693 to 875,361
_RS05970
SGL_RS05975: SGL_RS05975 - DUF3531 family protein, at 875,515 to 875,979
_RS05975
SGL_RS05980: SGL_RS05980 - hypothetical protein, at 876,008 to 877,297
_RS05980
Position (kb) 874
875
876 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 873.698 kb on + strand, within SGL_RS05965 at 873.789 kb on + strand, within SGL_RS05965 at 873.807 kb on - strand, within SGL_RS05965 at 873.878 kb on + strand, within SGL_RS05965 at 873.941 kb on - strand, within SGL_RS05965 at 873.959 kb on - strand, within SGL_RS05965 at 873.984 kb on + strand, within SGL_RS05965 at 873.997 kb on - strand, within SGL_RS05965 at 874.365 kb on - strand, within SGL_RS05965 at 874.367 kb on + strand, within SGL_RS05965 at 874.524 kb on + strand at 874.533 kb on - strand at 874.543 kb on - strand at 874.552 kb on + strand at 874.855 kb on + strand, within SGL_RS05970 at 874.973 kb on - strand, within SGL_RS05970 at 875.130 kb on - strand, within SGL_RS05970 at 875.201 kb on - strand, within SGL_RS05970 at 875.216 kb on + strand, within SGL_RS05970 at 875.341 kb on - strand at 875.603 kb on + strand, within SGL_RS05975 at 875.756 kb on + strand, within SGL_RS05975 at 875.756 kb on + strand, within SGL_RS05975 at 876.126 kb on - strand at 876.133 kb on + strand at 876.139 kb on + strand, within SGL_RS05980
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 873,698 + SGL_RS05965 0.21 +0.2 873,789 + SGL_RS05965 0.30 -0.1 873,807 - SGL_RS05965 0.31 +0.5 873,878 + SGL_RS05965 0.38 +0.0 873,941 - SGL_RS05965 0.44 +0.6 873,959 - SGL_RS05965 0.45 +0.3 873,984 + SGL_RS05965 0.48 +0.8 873,997 - SGL_RS05965 0.49 -0.3 874,365 - SGL_RS05965 0.83 -0.0 874,367 + SGL_RS05965 0.83 +0.3 874,524 + +0.8 874,533 - +0.1 874,543 - -0.1 874,552 + +1.0 874,855 + SGL_RS05970 0.24 +0.2 874,973 - SGL_RS05970 0.42 +0.2 875,130 - SGL_RS05970 0.65 -0.4 875,201 - SGL_RS05970 0.76 +0.1 875,216 + SGL_RS05970 0.78 +1.2 875,341 - +0.1 875,603 + SGL_RS05975 0.19 -0.0 875,756 + SGL_RS05975 0.52 -0.0 875,756 + SGL_RS05975 0.52 +0.2 876,126 - -3.3 876,133 + -1.9 876,139 + SGL_RS05980 0.10 -1.6
Or see this region's nucleotide sequence