Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05565

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS05560 and SGL_RS05565 are separated by 31 nucleotidesSGL_RS05565 and SGL_RS05570 are separated by 56 nucleotides SGL_RS05560: SGL_RS05560 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 794,764 to 795,900 _RS05560 SGL_RS05565: SGL_RS05565 - ABC transporter ATP-binding protein, at 795,932 to 796,732 _RS05565 SGL_RS05570: SGL_RS05570 - ABC transporter permease, at 796,789 to 797,631 _RS05570 Position (kb) 795 796 797Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 795.076 kb on - strand, within SGL_RS05560at 795.235 kb on - strand, within SGL_RS05560at 795.250 kb on + strand, within SGL_RS05560at 795.256 kb on + strand, within SGL_RS05560at 795.276 kb on + strand, within SGL_RS05560at 795.358 kb on - strand, within SGL_RS05560at 795.373 kb on - strand, within SGL_RS05560at 795.402 kb on - strand, within SGL_RS05560at 795.734 kb on - strand, within SGL_RS05560at 795.773 kb on - strand, within SGL_RS05560at 795.826 kb on + strandat 795.961 kb on - strandat 796.147 kb on + strand, within SGL_RS05565at 796.287 kb on + strand, within SGL_RS05565at 796.295 kb on - strand, within SGL_RS05565at 796.429 kb on - strand, within SGL_RS05565at 796.494 kb on + strand, within SGL_RS05565at 796.525 kb on + strand, within SGL_RS05565

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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795,076 - SGL_RS05560 0.27 -2.8
795,235 - SGL_RS05560 0.41 -1.1
795,250 + SGL_RS05560 0.43 -5.0
795,256 + SGL_RS05560 0.43 -1.6
795,276 + SGL_RS05560 0.45 -3.1
795,358 - SGL_RS05560 0.52 -4.6
795,373 - SGL_RS05560 0.54 -4.4
795,402 - SGL_RS05560 0.56 -3.9
795,734 - SGL_RS05560 0.85 -4.4
795,773 - SGL_RS05560 0.89 -2.9
795,826 + -4.8
795,961 - +0.1
796,147 + SGL_RS05565 0.27 +0.6
796,287 + SGL_RS05565 0.44 +0.1
796,295 - SGL_RS05565 0.45 -0.3
796,429 - SGL_RS05565 0.62 +0.7
796,494 + SGL_RS05565 0.70 -0.2
796,525 + SGL_RS05565 0.74 +0.8

Or see this region's nucleotide sequence