Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04965 and SGL_RS04970 are separated by 9 nucleotides SGL_RS04970 and SGL_RS04975 are separated by 3 nucleotides SGL_RS04975 and SGL_RS04980 are separated by 91 nucleotides SGL_RS04980 and SGL_RS04985 are separated by 7 nucleotides
SGL_RS04965: SGL_RS04965 - response regulator, at 667,447 to 667,842
_RS04965
SGL_RS04970: SGL_RS04970 - tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD, at 667,852 to 668,772
_RS04970
SGL_RS04975: SGL_RS04975 - hypothetical protein, at 668,776 to 669,162
_RS04975
SGL_RS04980: SGL_RS04980 - hypothetical protein, at 669,254 to 669,751
_RS04980
SGL_RS04985: SGL_RS04985 - reverse transcriptase-like protein, at 669,759 to 670,949
_RS04985
Position (kb) 668
669
670 Strain fitness (log2 ratio) -1
0
1 at 667.880 kb on - strand at 667.960 kb on + strand, within SGL_RS04970 at 667.960 kb on + strand, within SGL_RS04970 at 667.965 kb on + strand, within SGL_RS04970 at 668.000 kb on + strand, within SGL_RS04970 at 668.008 kb on - strand, within SGL_RS04970 at 668.134 kb on - strand, within SGL_RS04970 at 668.195 kb on - strand, within SGL_RS04970 at 668.196 kb on - strand, within SGL_RS04970 at 668.250 kb on - strand, within SGL_RS04970 at 668.260 kb on - strand, within SGL_RS04970 at 668.337 kb on - strand, within SGL_RS04970 at 668.452 kb on - strand, within SGL_RS04970 at 668.503 kb on + strand, within SGL_RS04970 at 668.511 kb on - strand, within SGL_RS04970 at 668.571 kb on - strand, within SGL_RS04970 at 668.571 kb on - strand, within SGL_RS04970 at 668.634 kb on - strand, within SGL_RS04970 at 668.921 kb on - strand, within SGL_RS04975 at 669.151 kb on - strand at 669.772 kb on + strand at 669.773 kb on + strand at 669.773 kb on + strand at 669.773 kb on + strand at 669.781 kb on - strand at 669.801 kb on - strand at 669.864 kb on + strand at 669.957 kb on + strand, within SGL_RS04985 at 670.030 kb on - strand, within SGL_RS04985 at 670.032 kb on - strand, within SGL_RS04985 at 670.106 kb on + strand, within SGL_RS04985
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 667,880 - -0.0 667,960 + SGL_RS04970 0.12 +0.5 667,960 + SGL_RS04970 0.12 +0.1 667,965 + SGL_RS04970 0.12 +0.1 668,000 + SGL_RS04970 0.16 +0.0 668,008 - SGL_RS04970 0.17 -0.2 668,134 - SGL_RS04970 0.31 +0.2 668,195 - SGL_RS04970 0.37 +0.4 668,196 - SGL_RS04970 0.37 -0.0 668,250 - SGL_RS04970 0.43 -0.2 668,260 - SGL_RS04970 0.44 +0.4 668,337 - SGL_RS04970 0.53 +0.1 668,452 - SGL_RS04970 0.65 -0.1 668,503 + SGL_RS04970 0.71 -0.3 668,511 - SGL_RS04970 0.72 +1.0 668,571 - SGL_RS04970 0.78 -0.1 668,571 - SGL_RS04970 0.78 -0.2 668,634 - SGL_RS04970 0.85 +0.2 668,921 - SGL_RS04975 0.37 +0.2 669,151 - -0.1 669,772 + +0.2 669,773 + +0.1 669,773 + +0.4 669,773 + +0.0 669,781 - +0.3 669,801 - +1.2 669,864 + -0.7 669,957 + SGL_RS04985 0.17 -0.4 670,030 - SGL_RS04985 0.23 +0.2 670,032 - SGL_RS04985 0.23 +0.9 670,106 + SGL_RS04985 0.29 +0.7
Or see this region's nucleotide sequence