Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04640 and SGL_RS04645 are separated by 131 nucleotides SGL_RS04645 and SGL_RS04650 are separated by 210 nucleotides
SGL_RS04640: SGL_RS04640 - cadherin domain-containing protein, at 587,228 to 593,125
_RS04640
SGL_RS04645: SGL_RS04645 - PhoH family protein, at 593,257 to 594,243
_RS04645
SGL_RS04650: SGL_RS04650 - tetratricopeptide repeat protein, at 594,454 to 595,650
_RS04650
Position (kb) 593
594
595 Strain fitness (log2 ratio) -1
0
1 at 592.439 kb on - strand, within SGL_RS04640 at 592.737 kb on - strand at 592.879 kb on - strand at 592.933 kb on + strand at 593.092 kb on - strand at 593.228 kb on + strand at 593.386 kb on + strand, within SGL_RS04645 at 593.424 kb on + strand, within SGL_RS04645 at 593.517 kb on - strand, within SGL_RS04645 at 593.562 kb on + strand, within SGL_RS04645 at 593.619 kb on + strand, within SGL_RS04645 at 594.006 kb on - strand, within SGL_RS04645 at 594.172 kb on + strand at 594.179 kb on + strand at 594.191 kb on + strand at 594.233 kb on - strand at 594.485 kb on - strand at 594.585 kb on - strand, within SGL_RS04650 at 594.631 kb on - strand, within SGL_RS04650 at 594.694 kb on + strand, within SGL_RS04650 at 594.696 kb on - strand, within SGL_RS04650 at 594.804 kb on - strand, within SGL_RS04650 at 594.996 kb on - strand, within SGL_RS04650 at 595.006 kb on - strand, within SGL_RS04650 at 595.041 kb on - strand, within SGL_RS04650 at 595.123 kb on + strand, within SGL_RS04650 at 595.154 kb on - strand, within SGL_RS04650 at 595.189 kb on + strand, within SGL_RS04650 at 595.198 kb on - strand, within SGL_RS04650 at 595.220 kb on - strand, within SGL_RS04650
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 592,439 - SGL_RS04640 0.88 -0.4 592,737 - +0.4 592,879 - -0.9 592,933 + +0.2 593,092 - +0.4 593,228 + -1.2 593,386 + SGL_RS04645 0.13 +0.1 593,424 + SGL_RS04645 0.17 +0.1 593,517 - SGL_RS04645 0.26 +0.2 593,562 + SGL_RS04645 0.31 +0.4 593,619 + SGL_RS04645 0.37 +1.0 594,006 - SGL_RS04645 0.76 +0.4 594,172 + +0.3 594,179 + -0.4 594,191 + -0.1 594,233 - +0.0 594,485 - +0.4 594,585 - SGL_RS04650 0.11 -0.3 594,631 - SGL_RS04650 0.15 +0.1 594,694 + SGL_RS04650 0.20 -1.0 594,696 - SGL_RS04650 0.20 -0.2 594,804 - SGL_RS04650 0.29 +0.0 594,996 - SGL_RS04650 0.45 -0.4 595,006 - SGL_RS04650 0.46 -0.3 595,041 - SGL_RS04650 0.49 +0.3 595,123 + SGL_RS04650 0.56 +0.5 595,154 - SGL_RS04650 0.58 -0.4 595,189 + SGL_RS04650 0.61 -0.0 595,198 - SGL_RS04650 0.62 -0.1 595,220 - SGL_RS04650 0.64 -0.3
Or see this region's nucleotide sequence