Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02565 and SGL_RS02570 are separated by 81 nucleotides SGL_RS02570 and SGL_RS02580 are separated by 571 nucleotides
SGL_RS02565: SGL_RS02565 - GH3 auxin-responsive promoter family protein, at 150,594 to 152,072
_RS02565
SGL_RS02570: SGL_RS02570 - amino acid ABC transporter substrate-binding protein, at 152,154 to 153,050
_RS02570
SGL_RS02580: SGL_RS02580 - DUF1818 family protein, at 153,622 to 153,996
_RS02580
Position (kb) 152
153
154 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 151.410 kb on + strand, within SGL_RS02565 at 151.418 kb on - strand, within SGL_RS02565 at 151.656 kb on - strand, within SGL_RS02565 at 152.177 kb on + strand at 152.431 kb on - strand, within SGL_RS02570 at 152.528 kb on - strand, within SGL_RS02570 at 152.563 kb on - strand, within SGL_RS02570 at 152.641 kb on + strand, within SGL_RS02570 at 152.900 kb on + strand, within SGL_RS02570 at 152.915 kb on - strand, within SGL_RS02570 at 152.975 kb on - strand at 153.006 kb on - strand at 153.052 kb on + strand at 153.139 kb on + strand at 153.140 kb on - strand at 153.147 kb on - strand at 153.882 kb on - strand, within SGL_RS02580 at 153.920 kb on - strand, within SGL_RS02580 at 153.927 kb on - strand, within SGL_RS02580 at 153.940 kb on - strand, within SGL_RS02580 at 154.020 kb on - strand at 154.031 kb on - strand at 154.037 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 151,410 + SGL_RS02565 0.55 +0.2 151,418 - SGL_RS02565 0.56 +0.4 151,656 - SGL_RS02565 0.72 +0.1 152,177 + +0.4 152,431 - SGL_RS02570 0.31 +0.0 152,528 - SGL_RS02570 0.42 +0.3 152,563 - SGL_RS02570 0.46 -0.0 152,641 + SGL_RS02570 0.54 +0.8 152,900 + SGL_RS02570 0.83 +0.2 152,915 - SGL_RS02570 0.85 +0.9 152,975 - -0.1 153,006 - +0.7 153,052 + +0.1 153,139 + -0.2 153,140 - +0.2 153,147 - +0.5 153,882 - SGL_RS02580 0.69 -0.8 153,920 - SGL_RS02580 0.79 -2.8 153,927 - SGL_RS02580 0.81 -2.5 153,940 - SGL_RS02580 0.85 -2.8 154,020 - +0.3 154,031 - +0.1 154,037 + +0.0
Or see this region's nucleotide sequence