Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02540 and SGL_RS18650 are separated by 108 nucleotides SGL_RS18650 and SGL_RS02545 are separated by 148 nucleotides SGL_RS02545 and SGL_RS02550 are separated by 127 nucleotides
SGL_RS02540: SGL_RS02540 - universal stress protein, at 145,761 to 146,615
_RS02540
SGL_RS18650: SGL_RS18650 - photosystem II reaction center protein PsbM, at 146,724 to 146,831
_RS18650
SGL_RS02545: SGL_RS02545 - histone deacetylase, at 146,980 to 147,894
_RS02545
SGL_RS02550: SGL_RS02550 - agmatinase, at 148,022 to 148,942
_RS02550
Position (kb) 146
147
148 Strain fitness (log2 ratio) -1
0
1 at 146.011 kb on - strand, within SGL_RS02540 at 146.453 kb on + strand, within SGL_RS02540 at 146.461 kb on - strand, within SGL_RS02540 at 146.508 kb on + strand, within SGL_RS02540 at 146.553 kb on - strand at 146.691 kb on + strand at 146.812 kb on - strand, within SGL_RS18650 at 146.840 kb on - strand at 146.880 kb on - strand at 146.963 kb on + strand at 147.028 kb on - strand at 147.036 kb on + strand at 147.052 kb on - strand at 147.284 kb on + strand, within SGL_RS02545 at 147.301 kb on - strand, within SGL_RS02545 at 147.325 kb on + strand, within SGL_RS02545 at 147.339 kb on - strand, within SGL_RS02545 at 147.466 kb on + strand, within SGL_RS02545 at 147.728 kb on + strand, within SGL_RS02545 at 147.852 kb on + strand at 147.860 kb on - strand at 147.873 kb on + strand at 147.880 kb on + strand at 147.914 kb on + strand at 148.078 kb on - strand at 148.407 kb on + strand, within SGL_RS02550 at 148.702 kb on - strand, within SGL_RS02550 at 148.702 kb on - strand, within SGL_RS02550 at 148.702 kb on - strand, within SGL_RS02550 at 148.742 kb on + strand, within SGL_RS02550 at 148.800 kb on - strand, within SGL_RS02550 at 148.872 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 146,011 - SGL_RS02540 0.29 -0.3 146,453 + SGL_RS02540 0.81 -0.9 146,461 - SGL_RS02540 0.82 -0.7 146,508 + SGL_RS02540 0.87 -0.9 146,553 - +0.0 146,691 + -0.1 146,812 - SGL_RS18650 0.81 -0.5 146,840 - -0.3 146,880 - +0.1 146,963 + +0.4 147,028 - +0.0 147,036 + +0.4 147,052 - -0.4 147,284 + SGL_RS02545 0.33 -0.1 147,301 - SGL_RS02545 0.35 +0.3 147,325 + SGL_RS02545 0.38 -0.2 147,339 - SGL_RS02545 0.39 +0.7 147,466 + SGL_RS02545 0.53 +1.0 147,728 + SGL_RS02545 0.82 -0.0 147,852 + -0.1 147,860 - +0.2 147,873 + -0.1 147,880 + -0.2 147,914 + +0.3 148,078 - -0.5 148,407 + SGL_RS02550 0.42 -1.0 148,702 - SGL_RS02550 0.74 -0.1 148,702 - SGL_RS02550 0.74 -0.2 148,702 - SGL_RS02550 0.74 +0.6 148,742 + SGL_RS02550 0.78 -0.1 148,800 - SGL_RS02550 0.84 +0.1 148,872 + -0.9
Or see this region's nucleotide sequence