Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02230

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02220 and SGL_RS02225 are separated by 137 nucleotidesSGL_RS02225 and SGL_RS02230 are separated by 5 nucleotidesSGL_RS02230 and SGL_RS02235 are separated by 31 nucleotides SGL_RS02220: SGL_RS02220 - phosphoribosylformylglycinamidine synthase subunit PurL, at 78,467 to 80,800 _RS02220 SGL_RS02225: SGL_RS02225 - hypothetical protein, at 80,938 to 81,690 _RS02225 SGL_RS02230: SGL_RS02230 - NUDIX hydrolase, at 81,696 to 82,259 _RS02230 SGL_RS02235: SGL_RS02235 - efflux RND transporter periplasmic adaptor subunit, at 82,291 to 83,853 _RS02235 Position (kb) 81 82 83Strain fitness (log2 ratio) -3 -2 -1 0 1at 81.516 kb on - strand, within SGL_RS02225at 81.654 kb on + strandat 81.777 kb on - strand, within SGL_RS02230at 81.936 kb on + strand, within SGL_RS02230at 81.982 kb on + strand, within SGL_RS02230at 81.995 kb on + strand, within SGL_RS02230at 81.995 kb on + strand, within SGL_RS02230at 82.099 kb on - strand, within SGL_RS02230at 82.100 kb on - strand, within SGL_RS02230at 82.124 kb on - strand, within SGL_RS02230at 82.296 kb on + strandat 82.296 kb on + strandat 82.397 kb on - strandat 82.397 kb on - strandat 82.437 kb on + strandat 82.437 kb on + strandat 82.455 kb on - strand, within SGL_RS02235at 82.459 kb on + strand, within SGL_RS02235at 82.495 kb on + strand, within SGL_RS02235at 82.606 kb on + strand, within SGL_RS02235at 82.639 kb on + strand, within SGL_RS02235at 82.645 kb on + strand, within SGL_RS02235at 82.706 kb on - strand, within SGL_RS02235at 82.902 kb on + strand, within SGL_RS02235at 82.929 kb on - strand, within SGL_RS02235at 82.942 kb on + strand, within SGL_RS02235at 82.942 kb on + strand, within SGL_RS02235at 82.950 kb on - strand, within SGL_RS02235at 83.001 kb on - strand, within SGL_RS02235at 83.066 kb on - strand, within SGL_RS02235at 83.245 kb on + strand, within SGL_RS02235

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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81,516 - SGL_RS02225 0.77 -2.8
81,654 + -0.3
81,777 - SGL_RS02230 0.14 +0.1
81,936 + SGL_RS02230 0.43 +0.5
81,982 + SGL_RS02230 0.51 +0.3
81,995 + SGL_RS02230 0.53 -0.0
81,995 + SGL_RS02230 0.53 +0.6
82,099 - SGL_RS02230 0.71 -0.1
82,100 - SGL_RS02230 0.72 +0.9
82,124 - SGL_RS02230 0.76 +0.3
82,296 + +0.7
82,296 + +1.2
82,397 - +0.7
82,397 - +0.3
82,437 + -0.2
82,437 + +0.5
82,455 - SGL_RS02235 0.10 -1.4
82,459 + SGL_RS02235 0.11 -0.5
82,495 + SGL_RS02235 0.13 -0.7
82,606 + SGL_RS02235 0.20 -0.1
82,639 + SGL_RS02235 0.22 -0.0
82,645 + SGL_RS02235 0.23 +1.0
82,706 - SGL_RS02235 0.27 +0.5
82,902 + SGL_RS02235 0.39 -0.6
82,929 - SGL_RS02235 0.41 +0.5
82,942 + SGL_RS02235 0.42 -0.4
82,942 + SGL_RS02235 0.42 -0.4
82,950 - SGL_RS02235 0.42 -0.0
83,001 - SGL_RS02235 0.45 -0.1
83,066 - SGL_RS02235 0.50 +0.6
83,245 + SGL_RS02235 0.61 -0.1

Or see this region's nucleotide sequence